Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,307,837 – 8,307,928 |
Length | 91 |
Max. P | 0.540995 |
Location | 8,307,837 – 8,307,928 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 78.19 |
Mean single sequence MFE | -34.42 |
Consensus MFE | -21.19 |
Energy contribution | -21.38 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.25 |
Mean z-score | -1.38 |
Structure conservation index | 0.62 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8307837 91 - 22224390 GAGAAAGCCUCUCCGGGUCGCGGUGAUGGUGAACGCAACAAAUCGAAGCCGCGUACCUUCGGAGUAGCUGUGGCACCACCA------GCCCCA------UUUU-- .....(((..((((((((((((((..((((...........))))..)))))).)))..)))))..)))(.(((.......------))).).------....-- ( -32.60) >DroVir_CAF1 942 99 - 1 GAAAAUGCCUGGCCGGGACGCGGCGAUGGUGAGCGCAGCAAAUCGAAACCCCGAAUGCGUGGCGUUCCCGUGCUGGCCUCU------UCACCAGUUGCAUUUGCA (.((((((((((..((((.(((((.((((.((((((.(((..(((......))).)))...))))))))))))).)).)))------)..))))..)))))).). ( -39.40) >DroSec_CAF1 1027 91 - 1 GAGAAAGCCUCUCCGGGUCGCGGUGAUGGUGAGCGCAACAAAUCGAAGCCGCGUACCUUCGGAGUGGCUGUGGCACCAUCU------GCCCCA------UUUU-- .....((((.((((((((((((((..((((...........))))..)))))).)))..))))).))))(.((((.....)------))).).------....-- ( -37.10) >DroSim_CAF1 1035 91 - 1 GAGAAAGCCUCUCCGGGUCGCGGUGAUGGUGAGCGCAACAAAUCGAAGCCGCGUACCUUCGGAGUGGCUGUGGCACCAUCU------GCCCCA------UUUU-- .....((((.((((((((((((((..((((...........))))..)))))).)))..))))).))))(.((((.....)------))).).------....-- ( -37.10) >DroEre_CAF1 1177 91 - 1 GAGAAAGCUUCUCCGGGUCGCGGUGAUGGUGAGCGCAGUAAAUCAAAUCCGCGUAUUCUUGGAGUCGCUUUGGCUUGACCG------ACACCA------UUUU-- (..(((((..(((((((.(((((...((((..((...))..))))...)))))....)))))))..)))))..).......------......------....-- ( -27.50) >DroYak_CAF1 1031 97 - 1 GAGAAAGCCUCUCCGGGUCGCGGUGAUGGUGAGCGCAACAAAUCGAAACCGCGUAUUCUCGGAGUGGCUGUGCCUUCACCAGUUGUUACACCA------UUUU-- (((..((((.(((((((.((((((..((((...........))))..))))))....))))))).)))).....)))................------....-- ( -32.80) >consensus GAGAAAGCCUCUCCGGGUCGCGGUGAUGGUGAGCGCAACAAAUCGAAGCCGCGUACCCUCGGAGUGGCUGUGGCACCACCU______GCACCA______UUUU__ .....(((..(((((((.((((((..((((...........))))..))))))....)))))))..))).................................... (-21.19 = -21.38 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:18 2006