Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,306,806 – 8,306,917 |
Length | 111 |
Max. P | 0.811782 |
Location | 8,306,806 – 8,306,917 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 75.26 |
Mean single sequence MFE | -38.77 |
Consensus MFE | -24.44 |
Energy contribution | -26.20 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.36 |
Mean z-score | -1.49 |
Structure conservation index | 0.63 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811782 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8306806 111 + 22224390 AUGAGCGCCACGACUAGAACACCUGCCACACCGGGGACACCUGGCACUCCCGGCAGCCUGGCCAUGGAAGUGGCCCGCGUCCAGAAUUCAGCACUCGCCGAGUUUAAAAAG .((..(((..............(((((...(((((....))))).......)))))...((((((....)))))).)))..))((((((.((....)).))))))...... ( -36.50) >DroPse_CAF1 1 94 + 1 -----------------AAUGUCUGAGACGCCACGUACACCUGGCACCCCCGGCAGCCUGGCCAUGGAGAUGGUCAAGGCCCAGAACACUGCUCUGGCAGAUUUCAAGAAG -----------------....(((((((.((((.(....).))))......((..((((((((((....)))))).))))))......((((....)))).)))).))).. ( -29.50) >DroSec_CAF1 2 111 + 1 AUGAGUGCCACGACUAGAACACCUGUCACACCGGGCACACCUGGCACUCCCGGCAGCCUGGCCAUGGAAGUGGCCCGCGUCCAGAAUUCAGCCCUCGCCGAGUUCAAAAAG ..((((((((.(((.((.....))))).....((.....))))))))))..((..((..((((((....)))))).))..)).((((((.((....)).))))))...... ( -40.30) >DroEre_CAF1 121 111 + 1 AUGAGCGUCACACCACGCACACCUGCCACUCCGGGCACACCUGGAACUCCUGGCAGCAUAGCCAAGGAAGUGGCCCGCAUCCAGAAUUCGGCCCUGGCCGAGUUCAAGAAG .((.((((......)))).))...(((((((((((....))))))..(((((((......))).)))).))))).........(((((((((....)))))))))...... ( -47.00) >DroYak_CAF1 1 111 + 1 AUGAGCGCCACACCACGAACACCUGCCACACCGGGCACACCUGGCACACCCGGCAGCCUGGCCAUGGAAGUGGCCCGCGUCCAGAAUUCAGCACUCGCCGAGUUCAAGAUG .((..(((..............(((((...(((((....))))).......)))))...((((((....)))))).)))..))((((((.((....)).))))))...... ( -37.70) >DroAna_CAF1 1 111 + 1 AUGUCCGAGACUCCCAGGACGCCAGCCACACCGGGAACUCCCGGUACACCUGGCAGCCUAGCUAUGGAGAUGGCCCGAGCCCAGAACACGGCGCUGGCGGAAUUCAAGAAG ...(((....((((((((..(((((....((((((....))))))....)))))..))).)....))))...(((.(.(((........))).).)))))).......... ( -41.60) >consensus AUGAGCGCCACACCAAGAACACCUGCCACACCGGGCACACCUGGCACUCCCGGCAGCCUGGCCAUGGAAGUGGCCCGCGUCCAGAAUUCAGCACUCGCCGAGUUCAAGAAG ....(((...............(((((..((((((....))))))......)))))...((((((....))))))))).....((((((.((....)).))))))...... (-24.44 = -26.20 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:17 2006