Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,298,629 – 8,298,721 |
Length | 92 |
Max. P | 0.997349 |
Location | 8,298,629 – 8,298,721 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 78.88 |
Mean single sequence MFE | -27.46 |
Consensus MFE | -15.02 |
Energy contribution | -15.44 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.27 |
Mean z-score | -3.07 |
Structure conservation index | 0.55 |
SVM decision value | 2.84 |
SVM RNA-class probability | 0.997349 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8298629 92 + 22224390 ACUUGA-AAUCUCGGGGAUCCGGGAAUUCUGAGCUAAUUGAUCGGGUUUUCUGGUUUUCUGAUCUUUUGGUUUUCCGAUUCUCUGGUUUUCAG ...(((-((.(.((((((..((((((......(((((..(((((((...........)))))))..)))))))))))..))))))).))))). ( -29.90) >DroSec_CAF1 4946 84 + 1 ACUUGA-AAUCUCGGGGAUCCGGGAAUUCUGACCUAAUUGAUCGGGUUUUCUGG--------UCUUUUGGUUUUCCGAUUCUCUGGUUCUCAG ......-......(((((((.(((((((..((((.((..((((((.....))))--------))..))))))....))))))).))))))).. ( -26.80) >DroSim_CAF1 5654 84 + 1 ACUUGA-AAUCUCGGGGAUCCGGGAAUUCUGAGCUAAUUGAUCGGGUUUUCUGG--------UCUUUUGGUUUUCCGAUUCUCUGGUUUUCAG ...(((-((.(.((((((..((((((......(((((..((((((.....))))--------))..)))))))))))..))))))).))))). ( -28.90) >DroEre_CAF1 5051 84 + 1 ACUUGA-AAUCUCGGGGAUCCGGGAAUUCUGAGCUAAUUGAUCGGAUAUUCUGG--------UUUUCUGGUUCUCUGGUUUUCGGUUUCUCAG ......-......(((((.(((..((((..((((((...((((((.....))))--------))...))))))...))))..))).))))).. ( -27.20) >DroAna_CAF1 6633 72 + 1 ACUUGAGAAUCUCGG--AGCCGGGAAUUCGGAGCUAAUUGCUCUGGUUU--CGG--------UUCGCU---------CCUCUCUGUUAUUCGG ....((((......(--(((((..(..(((((((.....))))))))..--)))--------)))...---------..)))).......... ( -24.50) >consensus ACUUGA_AAUCUCGGGGAUCCGGGAAUUCUGAGCUAAUUGAUCGGGUUUUCUGG________UCUUUUGGUUUUCCGAUUCUCUGGUUUUCAG ...(((......((((((.(((((((.(((((.(.....).))))).)))))))............((((....)))).))))))....))). (-15.02 = -15.44 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:16 2006