Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,293,603 – 8,293,723 |
Length | 120 |
Max. P | 0.629080 |
Location | 8,293,603 – 8,293,723 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.37 |
Mean single sequence MFE | -51.63 |
Consensus MFE | -30.28 |
Energy contribution | -32.53 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.25 |
Mean z-score | -1.84 |
Structure conservation index | 0.59 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629080 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8293603 120 + 22224390 GUAGGCGCUGGCAUAUGGUCCGUGGGCGUGGGCGUGCGCAUGGCUAUGGGCGUGGCCGUGGGCAUGACCAUGAUGAUAGUGAGCGGCCGCUGCGGCAGCAGCAUUAUGAUGGUAGAUCGC ...((((((.((.....(((....)))((((.(((((.(((((((((....))))))))).))))).)))).......)).))).)))(((((....))))).....(((.....))).. ( -54.40) >DroSec_CAF1 137 108 + 1 GUAGGCGCUGGCAUAUGGGCCGUGGGCGU------------GGCUGUGGGCGUGGCCGUGGGCAUGACCAUGGUGAUAGUGAGCGGCAGCUGCGGCAGCCGCAUUAUGAUGGUAGAUCGC ....((((((.(((....(((((((.(((------------(.(..(((......)))..).)))).)))))))....(((((((((.((....)).))))).)))).))).)))..))) ( -44.80) >DroSim_CAF1 141 108 + 1 GUAGGCGCUGGCAUAUGGGCCGUGGGCGU------------GGCUGUGGGCGUGGCCGUGGGCAUGACCAUGGUGAUAGUGAGCGGCCGCUGCGGCAGCCGCAUUAUGAUGGUAGAUCGC ....((.(((((......)))).).))((------------((((((.(..((((((((..((((.((....)).)).))..))))))))..).)))))))).....(((.....))).. ( -47.60) >DroEre_CAF1 169 120 + 1 GUAGGCGCUGGCAUAAGGGCCGUGGGCGUGGCUGUGGGCGUGGCCGUGGGCGUGGCCGUGGGCAUGACCAUGGUGAUAGUGGGCGGCCGCAGCAGCGGCGGCAUUGUGGUGGUAGAUCGC ...(((.((......)).)))...(.(((.(((((....((((((((..((((.(((((((......))))))).)).))..)))))))).))))).))).)...(((((.....))))) ( -57.40) >DroYak_CAF1 141 120 + 1 GUAGGCGCUGGCAUACGGCCCAUGGGCGUGGCCGUGGGCGUGACUGUGGGCGUGGCCAUGGGCAUGACCAUGGUGAUAGUGGGCGGCGGCAGCAGCAGCCGCAUUGUGAUGGUAGAUGGC (((.((....)).))).((((((((.((((.(((..(......)..))).)))).))))))))...(((((.(..((.....(((((.((....)).)))))))..).)))))....... ( -54.50) >DroAna_CAF1 136 108 + 1 GUACGCCGUGGCAUAGGG------GGCAUGGCCGUGGGCAUGUCCGUGCGA------GUGGGCGUGGCCAUGGUGGUAGUGGGCGGCAGCAGCUGCCGCGGCAUUGUGAUGGUAGAUGGC ....(((((.(((...(.------.((((.(((((((.((((((((.....------.)))))))).))))))).))....((((((....))))))))..)..))).)))))....... ( -51.10) >consensus GUAGGCGCUGGCAUAUGGGCCGUGGGCGUGGCCGUGGGC_UGGCUGUGGGCGUGGCCGUGGGCAUGACCAUGGUGAUAGUGAGCGGCCGCAGCGGCAGCCGCAUUAUGAUGGUAGAUCGC ...(.((((.((.....(.((((((.((((.(....).)))).)))))).)((.(((((((......))))))).)).)).)))).).((.((....)).)).................. (-30.28 = -32.53 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:15 2006