Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 989,382 – 989,494 |
Length | 112 |
Max. P | 0.532532 |
Location | 989,382 – 989,494 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.58 |
Mean single sequence MFE | -19.57 |
Consensus MFE | -17.08 |
Energy contribution | -17.72 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.10 |
Mean z-score | -1.35 |
Structure conservation index | 0.87 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 989382 112 - 22224390 UUCAGUUUUUU--------CCCAUUUUCGCAUUUCGCAACCAGCGUUCGAUAUUUUGAUUAGAACUCUGGUUGGACACCUCUCAGGUUGAUGAUAUCCAUCCCACCUCCAUAAACAUUUU ....((((...--------..............((.(((((((.((((.............)))).)))))))))........((((.((((.....))))..))))....))))..... ( -22.82) >DroSec_CAF1 71978 111 - 1 UUCAGUUUCUU--------C-CAUUUUCGCAUUUCGCAACCAGCGUUCGAUAUUUUGAUUAGAACUCUGGUUGGACACCUCUCAGGUUGAUGAUAUCCAUCCUACCUCCAUUAACAUUUC ....(((...(--------(-(......((.....))((((((.((((.............)))).)))))))))........((((.((((.....))))..)))).....)))..... ( -23.42) >DroSim_CAF1 51283 111 - 1 UUCAGUUUCUU--------C-CAUUUUCGCAUUUCGCAACCAGCGUUCGAUAUUUUGAUUAGAACUCUGGUUGGACACCUCUCAGUUUGAUGAUAUCCAUCCUACCUCCAUUAACAUUUC ....(((...(--------(-(......((.....))((((((.((((.............)))).))))))))).........((..((((.....))))..)).......)))..... ( -20.02) >DroEre_CAF1 85422 111 - 1 UUCAUUUUUUUUU---CCCC-CAUUUUCGUAUUUCGCAAC-GGCGUUCGAUAUUUUGAUUAGAACUCUGGUUGGACACCUCUCAGGUUGA---UGA-UAUCCUACCUCCAUUAACUUUUU .............---....-.....(((.....(((...-.)))..)))...((..(((((....)))))..))........(((((((---((.-...........)))))))))... ( -16.30) >DroYak_CAF1 77732 117 - 1 UUCAGUUUUUCACCCCCCCC-CAUUUUCGUAUUUCGCAAC-GGCGUUCGAUAUUUUGAUUAGAACUCUGGUUGGACACCUCUCAGGUUGAUGAUGA-UAUCCUACCUCAAUUAACUUUUC .(((.....(((.((.....-.....(((.....(((...-.)))..)))...((..(((((....)))))..)).........)).)))...)))-....................... ( -15.30) >consensus UUCAGUUUUUU________C_CAUUUUCGCAUUUCGCAACCAGCGUUCGAUAUUUUGAUUAGAACUCUGGUUGGACACCUCUCAGGUUGAUGAUAUCCAUCCUACCUCCAUUAACAUUUC .................................((.(((((((.((((.............)))).)))))))))........((((.((((.....))))..))))............. (-17.08 = -17.72 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:26 2006