Locus 3109

Sequence ID X_DroMel_CAF1
Location 8,287,551 – 8,287,657
Length 106
Max. P 0.694010
window5088

overview

Window 8

Location 8,287,551 – 8,287,657
Length 106
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 80.69
Mean single sequence MFE -33.34
Consensus MFE -22.56
Energy contribution -23.00
Covariance contribution 0.44
Combinations/Pair 1.21
Mean z-score -1.74
Structure conservation index 0.68
SVM decision value 0.34
SVM RNA-class probability 0.694010
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8287551 106 - 22224390
-AACCAA-----AUUGGCGCCAAAAAGCUUUCGAGCUGCCAGUGCUGCCACAUCCGCUUGGAUUGCGGCUUUUCUUGGCGCUUAUGCGGUGGCCACACUUUUGUUAUUAACA
-(((.((-----(.((..((((....((....((((.(((((.(((((...((((....)))).))))).....)))))))))..))..))))..)).))).)))....... ( -31.40)
>DroSec_CAF1 3224 103 - 1
-ACUCAA-----AUUGGCGCCAAAAAGCUUUCGAGUGGCGGGUGCCGCC---UCCACUUGGAUCGCAGCUUUUCUUGGCGCUUAUACGGUGGCCACACUUUUGUUAUUAACA
-...(((-----(..(((((((((((((((((((((((.(((.....))---))))))))))....))))))..)))))))).....((((....))))))))......... ( -36.70)
>DroSim_CAF1 3034 103 - 1
-ACUCAA-----AUUGGCGCCAAAAAGCUUUCGAGUGGCGAGUGCCGCC---UCCACUUGGAUCGCAGCUUUUCUUGGCGCUUAUACGGUGGCCACACUUUUGUUAUUAACA
-...(((-----(..((((((((((((((..((((((((....))))).---(((....)))))).))))))..)))))))).....((((....))))))))......... ( -33.40)
>DroEre_CAF1 3350 111 - 1
AAACCAAUAAUUCUUAGCGCCAAAAAGCUUUCGUGCUGCCAGUGCUGCCACAUCCAAG-CGAUUGUGGCUUUUCUUGGCGCUCUAGCGGUGGGCACACUUUUGUUAUUAACA
.....((((((....((((((((..(((......))).........((((((..(...-.)..)))))).....)))))))).....((((....))))...)))))).... ( -29.70)
>DroYak_CAF1 3312 111 - 1
AAACCGAUACUUCUUGGCGCCAAAUAGCAUUCGUGCUGCCAGUGCUGCCAGAUCCAAG-CGAUUGCGGUUUUUCUUGGCGCUCUGGUGGUGGGCACACUAUUGUUAUUAACA
...((((......)))).....(((((((...(((.((((...((..(((((.(((((-.((........)).)))))...)))))..)).)))))))...))))))).... ( -35.50)
>consensus
_AACCAA_____AUUGGCGCCAAAAAGCUUUCGAGCUGCCAGUGCUGCCA_AUCCACUUGGAUUGCGGCUUUUCUUGGCGCUUAUGCGGUGGCCACACUUUUGUUAUUAACA
...............((((((((...(((....))).......(((((...((((....)))).))))).....)))))))).....((((....))))............. (-22.56 = -23.00 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:12 2006