Locus 3106

Sequence ID X_DroMel_CAF1
Location 8,282,631 – 8,282,734
Length 103
Max. P 0.996073
window5078 window5079

overview

Window 8

Location 8,282,631 – 8,282,734
Length 103
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 79.22
Mean single sequence MFE -25.83
Consensus MFE -18.49
Energy contribution -19.93
Covariance contribution 1.45
Combinations/Pair 1.05
Mean z-score -1.41
Structure conservation index 0.72
SVM decision value 0.01
SVM RNA-class probability 0.539452
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8282631 103 + 22224390
UUUGUUGUUGCUGUGGUGUGCGGCUGUGUGUGUGUGUGAGUGUA-GGAGCGAAAGAGGGAAAGGGAUGGUAGUUUUUGCUGACGCCCCAGCAACAAAAACAAAU
(((((((((((((.(((((.(((((((.(.((..(....)..))-.).)))..........((((((....))))))))))))))).))))))))...))))). ( -29.20)
>DroSec_CAF1 4030 94 + 1
UUUGUUGUUGCUGUGGUGUGCGGCUGUGU----GUGUGAGUGUA-GGGGAGAAAGAGGGAGAGG----GAAG-UUUUGCUGACGCCCCAGCAACAAAAACAAAU
(((((((((((((.(((((....((.((.----.(....)..))-.)).......((.((((..----....-)))).)).))))).))))))))...))))). ( -25.80)
>DroEre_CAF1 7156 92 + 1
UUUGUUGUUGCUGUAGCGUGCCUGUGUGUGU---------UGAAGAGGGAGGAAGAGGGAGAGAGAUGGAAG-UUUUGCUGACGCC-CAGCAA-AAAAACAAAU
((((((.((((((..((((.(((.(.(.(..---------...).).).))).......((..((((....)-)))..)).)))).-))))))-...)))))). ( -22.50)
>consensus
UUUGUUGUUGCUGUGGUGUGCGGCUGUGUGU__GUGUGAGUGUA_GGGGAGAAAGAGGGAGAGGGAUGGAAG_UUUUGCUGACGCCCCAGCAACAAAAACAAAU
(((((((((((((.(((((.((((.....................................................))))))))).))))))))...))))). (-18.49 = -19.93 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 8,282,631 – 8,282,734
Length 103
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 79.22
Mean single sequence MFE -16.45
Consensus MFE -12.86
Energy contribution -12.97
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -2.64
Structure conservation index 0.78
SVM decision value 2.65
SVM RNA-class probability 0.996073
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8282631 103 - 22224390
AUUUGUUUUUGUUGCUGGGGCGUCAGCAAAAACUACCAUCCCUUUCCCUCUUUCGCUCC-UACACUCACACACACACACAGCCGCACACCACAGCAACAACAAA
.(((((...((((((((((((....))...........................((..(-(..................))..))...)).))))))))))))) ( -17.77)
>DroSec_CAF1 4030 94 - 1
AUUUGUUUUUGUUGCUGGGGCGUCAGCAAAA-CUUC----CCUCUCCCUCUUUCUCCCC-UACACUCACAC----ACACAGCCGCACACCACAGCAACAACAAA
.(((((...((((((((.((.(((.((....-....----...................-...........----.....)).).)).)).))))))))))))) ( -17.13)
>DroEre_CAF1 7156 92 - 1
AUUUGUUUUU-UUGCUG-GGCGUCAGCAAAA-CUUCCAUCUCUCUCCCUCUUCCUCCCUCUUCA---------ACACACACAGGCACGCUACAGCAACAACAAA
.((((((...-((((((-(((((..((....-................................---------..........))))))).)))))).)))))) ( -14.45)
>consensus
AUUUGUUUUUGUUGCUGGGGCGUCAGCAAAA_CUUCCAUCCCUCUCCCUCUUUCUCCCC_UACACUCACAC__ACACACAGCCGCACACCACAGCAACAACAAA
.(((((...((((((((.((.((..((........................................................)))).)).))))))))))))) (-12.86 = -12.97 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:05 2006