Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,277,934 – 8,278,039 |
Length | 105 |
Max. P | 0.957364 |
Location | 8,277,934 – 8,278,039 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 89.25 |
Mean single sequence MFE | -27.44 |
Consensus MFE | -22.89 |
Energy contribution | -23.33 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -3.37 |
Structure conservation index | 0.83 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957364 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8277934 105 + 22224390 CUGUGCGGUUUUUUUGAAAACGUCAGUUUUGAAAAAAAAAAACCAGAACUGGCGAUUUCAAGCACCGAGCGUCGUUUGUCUUUCAAUAUUUAUCAAAAAAAAAAC ..((.((((...(((((((.(((((((((((............))))))))))).))))))).)))).))................................... ( -26.10) >DroSec_CAF1 4317 97 + 1 CUGUGCGGUUU--UUGAAAACCUCAGUUUUGGAAU--AAAAACCAGAACUGGCGAUUUCAAGCAUCGAGCCUCGUUUGUCUUUCAAUAUUUACCAAAA----AUC ..((.((((.(--((((((.(.((((((((((...--.....)))))))))).).))))))).)))).))............................----... ( -23.00) >DroSim_CAF1 15401 97 + 1 CUGUGCGGUUU--UUGAAAACGUCAGUUUUGGAAU--AAAAACCAGAACUGGCGUUUUCAAGCAUCGAGCCUCGUUUGUCUUUCAAUAUUUAACAAAA----AUC ..((.((((.(--(((((((((((((((((((...--.....)))))))))))))))))))).)))).))....(((((.............))))).----... ( -33.22) >consensus CUGUGCGGUUU__UUGAAAACGUCAGUUUUGGAAU__AAAAACCAGAACUGGCGAUUUCAAGCAUCGAGCCUCGUUUGUCUUUCAAUAUUUAACAAAA____AUC ..((.((((....((((((.((((((((((((..........)))))))))))).))))))..)))).))................................... (-22.89 = -23.33 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:00 2006