Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,277,466 – 8,277,576 |
Length | 110 |
Max. P | 0.612041 |
Location | 8,277,466 – 8,277,576 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 95.22 |
Mean single sequence MFE | -33.73 |
Consensus MFE | -32.05 |
Energy contribution | -32.05 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.03 |
Mean z-score | -1.44 |
Structure conservation index | 0.95 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612041 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8277466 110 - 22224390 AU-GGAGAUAAUGGUGGAUUUUCGAGGGCUAGCACAUUUUGGUAAGGUAAUUUCAUCUUGCUUUUCGUACUUGGAUGCGGUACCUUGAAGGUCCGCUCUGGCCUGACUUGA--- ..-((.......((((((((((((((((((.(((......((((((((......)))))))).((((....)))))))))).)))))))))))))))....))........--- ( -33.70) >DroSec_CAF1 3831 109 - 1 AU-GGAGAUAAUGGCGGAUUUUCGAGGGCUAGCACGUUUUGGUAAGGUAAUUUCAUCUUGCUUUUCGUA-UUGGAUGCGGUACCUUGAAGGUCCGCUCUGGCCUGACUUGA--- ..-((.......(((((((((((((((.((((.(((....((((((((......))))))))...))).-))))........)))))))))))))))....))........--- ( -36.10) >DroSim_CAF1 14919 109 - 1 AU-GGAGAUAAUGGCGGAUUUUCGAGGGCUAGCACGUUUUGGUAAGGUAAUUUCAUCUUGCUUUUCGUA-UUGGACGCGGUACCUUGAAGGUCCGCUCUGGCCUGACUUGA--- ..-((.......(((((((((((((((.((((.(((....((((((((......))))))))...))).-))))........)))))))))))))))....))........--- ( -36.10) >DroYak_CAF1 15130 113 - 1 AUUGCAGAUAAUGGUGGAUUUUCGAGGGCUAGCACAUUUUGGUAAGGUAAUUUCAUCUUGCUUUUCGUA-UUGGAUGCGGUACCUUUAAGGUCCGCUCUGGCCUGACUUGACUU .(..(........)..)....(((((((((((........((((((((......)))))))).......-......((((.(((.....))))))).))))))...)))))... ( -29.00) >consensus AU_GGAGAUAAUGGCGGAUUUUCGAGGGCUAGCACAUUUUGGUAAGGUAAUUUCAUCUUGCUUUUCGUA_UUGGAUGCGGUACCUUGAAGGUCCGCUCUGGCCUGACUUGA___ ............((((((((((((((((((.((.......((((((((......)))))))).((((....)))).))))).)))))))))))))))................. (-32.05 = -32.05 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:59 2006