Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,273,912 – 8,274,014 |
Length | 102 |
Max. P | 0.990358 |
Location | 8,273,912 – 8,274,014 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 74.26 |
Mean single sequence MFE | -29.26 |
Consensus MFE | -20.80 |
Energy contribution | -21.47 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.10 |
Mean z-score | -1.88 |
Structure conservation index | 0.71 |
SVM decision value | 2.21 |
SVM RNA-class probability | 0.990358 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8273912 102 + 22224390 AGCAGCUCCCUCCACCUCCUCCUCAUCGUCCUCAUCCGGGGAUAAUAUCUGUGCCAAUGCCCGUCGCCGGGCCACCGAAUGCUGGGCAACCAAGCUGCAGAA .((((((....................((((((....))))))....((.(((.....(((((....)))))))).))....(((....))))))))).... ( -32.80) >DroWil_CAF1 17816 90 + 1 AGCAACA---------GCAUCAUC---AACAUCGACGGGAGAAAGCAUUUGUGCCAAUGCCCGACGACGAGCCACUGAAUGUUGGGCAACCAAAUUGCAAAA .((((((---------(.....((---....(((.((((.....(((....))).....)))).))).))....)))....((((....)))).)))).... ( -23.90) >DroYak_CAF1 11338 99 + 1 AGCAGCUCCCUCCACCUCCUCCUC---UUCCUCAUCUGGGGAUAAUAUCUGUGCCAAUGCCCGUCGCCGGGCAACCGAAUGCUGGGCCACCAAGCUGCAGAA .((((((.....(((.........---.(((((....)))))........))).....(((((.((.(((....)))..)).))))).....)))))).... ( -31.07) >consensus AGCAGCUCCCUCCACCUCCUCCUC___AUCCUCAUCCGGGGAUAAUAUCUGUGCCAAUGCCCGUCGCCGGGCCACCGAAUGCUGGGCAACCAAGCUGCAGAA .((((((......................((((....)))).................(((((.((.(((....)))..)).))))).....)))))).... (-20.80 = -21.47 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:58 2006