Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 126,081 – 126,200 |
Length | 119 |
Max. P | 0.983258 |
Location | 126,081 – 126,200 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.99 |
Mean single sequence MFE | -42.91 |
Consensus MFE | -37.30 |
Energy contribution | -38.74 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.11 |
Mean z-score | -1.87 |
Structure conservation index | 0.87 |
SVM decision value | 1.94 |
SVM RNA-class probability | 0.983258 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 126081 119 + 22224390 CUGACCACCUGGACCAGCUGCGGCUCUUGGCCAGGACCUCCUUGGAUCAUCAUCUGGUGCAUUCCAGGCGACAUGGUGAUGGUCUCCAGCUGGUCGCCAUUCUCCACCUUUCAGGAGAU- ...........(((((((((.(((.....)))(((....))).(((((((((((((.(((.......))).)).))))))))))).))))))))).....(((((........))))).- ( -47.60) >DroSec_CAF1 14220 118 + 1 CUGACCACCUGUACCAGCUGGGGCUCUUGUCCAUGACCUCCUUGGAUCAUCAUCUGGUGCAUUCCAGGCGACAUGGUGAUGGUCUCCAGCUGAUCGCAUUCUUCCACGUUUCAGGAGU-- .......((((.(((((((((((((.(((.(((((...((((((((.((((....))))...)))))).)))))))))).)))).)))))))...(........)..))..))))...-- ( -38.80) >DroSim_CAF1 19748 120 + 1 CUGACCACCUGUACCAGCUGGGGCUCUUGGCCAGGACCUCCUUGGAUCAUCAUCUGGUGCAUUCCAGGCGACAUGGUGAUGGUCUCCAGCUGAUCGCCAUUCUCCACCUUUCAGGAGGUA ...(((.((((...((((((((((.....)))(((....))).(((((((((((((.(((.......))).)).))))))))))))))))))...(........)......)))).))). ( -43.10) >DroEre_CAF1 20811 120 + 1 CUGACCACCUGUACCAGCUGGGGCUCUUGGCCAGGACCUCCCUGAAUCAUCAUCUGAUGCAUACCAGGCGACAUGGUGAUGGUCUCCAGCUGGUCGCCAUUUUCCACCUUUCGGGAUGUA ..........(((((((((((((........((((.....)))).(((((((((((.(((.......))).)).)))))))))))))))))))).))....((((.......)))).... ( -40.40) >DroYak_CAF1 17172 120 + 1 CUGACCACCUGUACCAGCUGGGGUUCUUGGCCAGGACCUCCCUGGAUCAUCAUCUGGUGCAUUCCAGGCGACAUGGUGAUGGUCUCCAGCUGGUCGCCAUUCUCCACCUUUCAGGAUUUG .......((((.(((((((((((......((((..(((((((((((.((((....))))...)))))).))...)))..))))))))))))))).................))))..... ( -44.67) >consensus CUGACCACCUGUACCAGCUGGGGCUCUUGGCCAGGACCUCCUUGGAUCAUCAUCUGGUGCAUUCCAGGCGACAUGGUGAUGGUCUCCAGCUGGUCGCCAUUCUCCACCUUUCAGGAGGU_ ..........(.(((((((((((......((((..(((((((((((.((((....))))...)))))).))...)))..)))))))))))))))).....(((((........))))).. (-37.30 = -38.74 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:50 2006