Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,268,920 – 8,269,023 |
Length | 103 |
Max. P | 0.719013 |
Location | 8,268,920 – 8,269,023 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 74.17 |
Mean single sequence MFE | -29.18 |
Consensus MFE | -16.25 |
Energy contribution | -15.27 |
Covariance contribution | -0.98 |
Combinations/Pair | 1.39 |
Mean z-score | -1.86 |
Structure conservation index | 0.56 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.719013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8268920 103 - 22224390 UCUCUAGCUACUU---GGUAUUCUUCAAGUAUUCGAGUCGGGGAACCAUCCCCCU---------UUUUGACGCUACAGUUGUUUUAGGGAGACGAAGUUCAAUUAUAUUUCAUUG .((.(((((((((---((......))))))).(((((..(((((....)))))..---------.))))).)))).)).........(....)(((((........))))).... ( -25.40) >DroSim_CAF1 7035 103 - 1 UCCCUAGCUACUU---GGUAUUCUCCAACUGCUCGAUCCGGGGAAGCAUCCUCCC---------UUUGGACGCUACAGUUGUUUUAGGGAGACGAAGUUUUAUUAUAUUUCAUUG (((((((((....---)))......((((((..((.((((((((.......))))---------)..)))))...))))))...))))))...(((((........))))).... ( -28.00) >DroYak_CAF1 5940 115 - 1 UCCCUAGCUGGUGGAGGGGGUUCUUCAAAUUCUCGAUUCGGGGGUAUAUUCCCCUGAUCGUCGUUUUUAUUUCUACAGUUGUUUUAGGGAGAUGAUGUUAAAUUAUAGUUCAUUG ((((((((((.(((((((((((.....)))))))((((((((((......)))))))..))).........)))))))).....))))))(((((..............))))). ( -34.14) >consensus UCCCUAGCUACUU___GGUAUUCUUCAAAUACUCGAUUCGGGGAAACAUCCCCCU_________UUUUGACGCUACAGUUGUUUUAGGGAGACGAAGUUAAAUUAUAUUUCAUUG (((((((.........((((((.....))))))......(((((....)))))..............................)))))))...(((((........))))).... (-16.25 = -15.27 + -0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:54 2006