Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,264,853 – 8,264,944 |
Length | 91 |
Max. P | 0.986199 |
Location | 8,264,853 – 8,264,944 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 73.96 |
Mean single sequence MFE | -26.20 |
Consensus MFE | -21.13 |
Energy contribution | -21.13 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.12 |
Mean z-score | -1.58 |
Structure conservation index | 0.81 |
SVM decision value | 2.03 |
SVM RNA-class probability | 0.986199 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8264853 91 + 22224390 AAAUGCAGUUGUU---------GUUGUUGCUUUUAUUAUGAUUCACGACGUACCGCUCCGCUCCAAGAAUUUUCUGGAGAGGCAGCGAAACAGGUGCUGG ....(((.(((((---------(((((.(..((......))..))))))....((((((.(((((.((....))))))).)).)))).))))).)))... ( -28.40) >DroSim_CAF1 2900 97 + 1 AAAUGCAGCUGUUGUUAUUGUUGUUGGUGCUAUUAUCAUGAUUCA---CGUACCGCUCCGCUCCAAGAAUUUUCUGGAGAGGCAGCGAAACAGGUGCUGG ....(((.(((((............(((((....((....))...---.)))))(((((.(((((.((....))))))).)).)))..))))).)))... ( -30.80) >DroYak_CAF1 2016 74 + 1 AAAUGCAGUUGUU---------AC--------------UGAUUCA---CAUACCGCUCCACUGUACGAAUUUUCUGGAGAGGGAGCGAAACAGGUGCUGA ....(((.(((((---------..--------------((.....---))...((((((.((.((.((....)))).))..)))))).))))).)))... ( -19.40) >consensus AAAUGCAGUUGUU_________GUUG_UGCU_UUAU_AUGAUUCA___CGUACCGCUCCGCUCCAAGAAUUUUCUGGAGAGGCAGCGAAACAGGUGCUGG ....(((.(((((........................(((........)))..((((((.(((((.((....))))))).)).)))).))))).)))... (-21.13 = -21.13 + 0.01)
Location | 8,264,853 – 8,264,944 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 73.96 |
Mean single sequence MFE | -22.01 |
Consensus MFE | -16.22 |
Energy contribution | -16.67 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -1.72 |
Structure conservation index | 0.74 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.984081 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8264853 91 - 22224390 CCAGCACCUGUUUCGCUGCCUCUCCAGAAAAUUCUUGGAGCGGAGCGGUACGUCGUGAAUCAUAAUAAAAGCAACAAC---------AACAACUGCAUUU ....(((.(((.(((((.((.(((((((....)).))))).))))))).)))..))).............(((.....---------......))).... ( -22.70) >DroSim_CAF1 2900 97 - 1 CCAGCACCUGUUUCGCUGCCUCUCCAGAAAAUUCUUGGAGCGGAGCGGUACG---UGAAUCAUGAUAAUAGCACCAACAACAAUAACAACAGCUGCAUUU ...(((.((((((((((.((.(((((((....)).))))).)))))))..((---((...)))).......................))))).))).... ( -26.60) >DroYak_CAF1 2016 74 - 1 UCAGCACCUGUUUCGCUCCCUCUCCAGAAAAUUCGUACAGUGGAGCGGUAUG---UGAAUCA--------------GU---------AACAACUGCAUUU ...(((.(((.(((((..((.(((((..............))))).))...)---)))).))--------------).---------......))).... ( -16.74) >consensus CCAGCACCUGUUUCGCUGCCUCUCCAGAAAAUUCUUGGAGCGGAGCGGUACG___UGAAUCAU_AUAA_AGCA_CAAC_________AACAACUGCAUUU ...(((..((((..(((.((.(((((((....)).))))).)))))(((.(.....).)))..........................))))..))).... (-16.22 = -16.67 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:52 2006