Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,256,615 – 8,256,721 |
Length | 106 |
Max. P | 0.950917 |
Location | 8,256,615 – 8,256,721 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 73.46 |
Mean single sequence MFE | -25.50 |
Consensus MFE | -14.99 |
Energy contribution | -15.30 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.16 |
Mean z-score | -1.97 |
Structure conservation index | 0.59 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.950917 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8256615 106 - 22224390 AAUUCGAUGCGAAAGGAUAAAGAUUUGCCGCUGGGGCAGCGAAAAAGAGAGAAAAAACACAGUGG---GCAAGUGGUGCACUUUCCAUAGAAGAGUGUUCCAAUGUGCC ..((((((.(....).))......(((((.....))))))))).....................(---(((..(((.(((((((.......))))))).)))...)))) ( -27.60) >DroSec_CAF1 6948 109 - 1 AAUUUGAUGCGAAAGGAUAAAGAUUUGCCGCUGGGGCAGCGAAAAAGAGAGAAAAAACACAUUGGGCGGCAAGUGGUGCACUUUCCAUAGAAAAGUGCUCCAAUGUGCC ..((..((((....)........(((((.((....)).)))))................)))..)).((((..(((.(((((((.......))))))).)))...)))) ( -30.30) >DroYak_CAF1 11564 83 - 1 CAUUUGAUUCGAAAGGAUU--------------------CGAAAAAUGGAGAA-AAACACAGUGG---GCAAAAGAAGCACUUUUCAUAGAAGAGUAUUUCCAU--GCC ..((((((((....))).)--------------------))))..(((((((.-...........---((.......))(((((((...))))))).)))))))--... ( -18.60) >consensus AAUUUGAUGCGAAAGGAUAAAGAUUUGCCGCUGGGGCAGCGAAAAAGAGAGAAAAAACACAGUGG___GCAAGUGGUGCACUUUCCAUAGAAGAGUGUUCCAAUGUGCC ..((((((.(....).))......(((((.....))))))))).........................(((..(((.(((((((.......))))))).)))...))). (-14.99 = -15.30 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:42 2006