Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,243,237 – 8,243,357 |
Length | 120 |
Max. P | 0.769983 |
Location | 8,243,237 – 8,243,357 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.42 |
Mean single sequence MFE | -21.14 |
Consensus MFE | -4.58 |
Energy contribution | -7.54 |
Covariance contribution | 2.96 |
Combinations/Pair | 1.10 |
Mean z-score | -1.75 |
Structure conservation index | 0.22 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.769983 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8243237 120 + 22224390 AGGAAAUCCCCUUUAUAAAAUGGAUAUUGUAUGCACUGGGAUAAGAUAUAUAUUAUAUGGUAAUAUUAUAUUAUAUCCCAAAUUUUGUGGAACAUCAAAUGAAUUGACCAUGACUUCCGG .((((.((...(((((((((((.(((...))).)..(((((((.((((((((((((...)))))).)))))).))))))).))))))))))...((((.....))))....)).)))).. ( -25.40) >DroSec_CAF1 144385 102 + 1 -----AUCCCCUUUAUAAUGUGGAUAUUGUUUGUACUGGGAUACCAUAUCC--------GCA-----AUAUUAUAUCCCACAUUCUGUGGAUCAUCACAUAAAUUGUCCAUGACUUCCCA -----..............(((((((..((((((..(((((((..((((..--------...-----))))..)))))))......(((......))))))))))))))))......... ( -20.70) >DroSim_CAF1 108201 100 + 1 AGGAAAUCCCCUUUAUAUCCGCAAUAUUUUAUAUCCU-------UAUAUCA--------GCA-----AUAUUAUAUCCCAAACUCUGUGGAUCAUCAAAUAAAUUGUCCAUGACUUCCCA .((((.((..............((((((.((((....-------))))...--------..)-----)))))..............((((((.((.......)).)))))))).)))).. ( -9.50) >DroEre_CAF1 133562 107 + 1 AGGAAAUCGCCUCUAGAAAGGGGAAAGUGUAUGCACUGCGAUACCAUAUCC--------GCA-----AUAUUACAUCCCAAGUAUUGGGGAUCAUCAAAUAUAUUGACCAUGACUUUCGA .(((((((((((((....))))...((((....)))))))))..(((((((--------.((-----(((((........))))))).))))..((((.....))))..)))..)))).. ( -24.60) >DroYak_CAF1 134618 107 + 1 AGGUAAUCACCUCUAUAAAGUGGAUAUUGUAUGCACUGCGAUACCAUAUCC--------GCA-----AUAUUAUCUCCCAAGUAUUGUGGAUCAUCAAAUAUAUUGACCAUGACUUCCGA .((...(((..((.(((..((((.(((((((.....)))))))))))((((--------(((-----(((((........)))))))))))).........))).))...)))...)).. ( -25.50) >consensus AGGAAAUCCCCUUUAUAAAGUGGAUAUUGUAUGCACUGCGAUACCAUAUCC________GCA_____AUAUUAUAUCCCAAAUUUUGUGGAUCAUCAAAUAAAUUGACCAUGACUUCCGA .((((.((.............((((((.((((........)))).))))))........................(((((.....)).)))....................)).)))).. ( -4.58 = -7.54 + 2.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:40 2006