Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,242,752 – 8,242,850 |
Length | 98 |
Max. P | 0.527605 |
Location | 8,242,752 – 8,242,850 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.09 |
Mean single sequence MFE | -28.38 |
Consensus MFE | -14.58 |
Energy contribution | -15.33 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.30 |
Mean z-score | -1.73 |
Structure conservation index | 0.51 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527605 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8242752 98 + 22224390 CUUUGCUGUCAUCCUGCAUCUCAACGAUUCGAGGAGUACCUUCGAGGACAUUCUCUUCAAUGUCCUCCAGUCUUAAUGUGCUCA----------------------GUUCGCUGUAAUCU ...(((.........))).......(((((((.((((((((..(((((((((......))))))))).)).......)))))).----------------------..)))....)))). ( -21.91) >DroSec_CAF1 143840 119 + 1 CUCUGCUGUCAUCCUGCAUCUCAACGAUUUGAUGACUACCUUCGUGGACAUUCUCUUCAAUGUCCC-CAGUCUUAUUGUGCUCAUCGAUCUGAUCGAUCGAAACGAGUUCGCAGUAGUCU ((((((.((((((....(((.....)))..)))))).......(.(((((((......))))))).-).........(.((((.((((((.....))))))...)))).))))).))... ( -31.30) >DroSim_CAF1 107631 119 + 1 CUCUGCUGUCAUCCUGUAUCUCAACAACUCGAGGAGUACCUUCGAUGACAUUCUCUUUAAUGUCCU-CAAUCUCAAUGUGCUCAUUGAUCUGAUAGAUCGAAUCGAGUUCGCAGUAGUUU ..(((((((......((......))(((((((.((((((.((.(((((((((......))))))..-..)))..)).)))))).((((((.....)))))).))))))).)))))))... ( -32.60) >DroEre_CAF1 132972 110 + 1 CACUGUUGUUAUCGUGCAUCUCAUCGACUCGAGGACUACCUUCCAGGACAUUCUCUUCUAUGUCCU-CAGUCUUUAUGUGCUGAUCGACCGGA---------UCGAGUUCGCAGUAGUCU .((((((((......))).......(((((((((....)).(((.((((((........))))))(-((((........)))))......)))---------))))))).)))))..... ( -28.70) >DroYak_CAF1 134034 110 + 1 CUCUGCUAUUAGUCUGCAUCCCAACGAUUGGGGGACUACUUUCCAGGACACUCUCUUCUAUGUCCU-CAGUCUUUAUGUGCUGAUCGAUGUGA---------UCGAGUUCGCAGUUGUCU ..((((.....((((....((((.....))))(((......))).))))((((...((.(((((.(-((((........)))))..)))))))---------..))))..))))...... ( -27.40) >consensus CUCUGCUGUCAUCCUGCAUCUCAACGAUUCGAGGACUACCUUCGAGGACAUUCUCUUCAAUGUCCU_CAGUCUUAAUGUGCUCAUCGAUCUGA_________UCGAGUUCGCAGUAGUCU ..(((((((......((((.........((((((.....))))))(((((((......)))))))............))))...(((................)))....)))))))... (-14.58 = -15.33 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:39 2006