Locus 3086

Sequence ID X_DroMel_CAF1
Location 8,240,253 – 8,240,353
Length 100
Max. P 0.996787
window5047

overview

Window 7

Location 8,240,253 – 8,240,353
Length 100
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 89.95
Mean single sequence MFE -15.88
Consensus MFE -14.87
Energy contribution -14.87
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.94
SVM decision value 2.75
SVM RNA-class probability 0.996787
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8240253 100 - 22224390
AUGUAUAUAAAAAAAAACUUCAAACAAACAGCAGCCAAAAAGCUUUGAAGGGUUUUCCCUC-UCACAUUUUUUCUCAUUUUUUACCCUGCAGCUGUUACCG
..........................(((((((((......))).(((((((....)))).-)))..........................)))))).... ( -15.90)
>DroSec_CAF1 141425 94 - 1
AUGUAU----AAAAAAACUUCAAACAAACAGCAGCCAAAAAGCUUUGAAGGGUUUUCCAUC-UCAC--UUUUUCGCAUUUUUUACCCUGCAGCUGUUACCG
......----................(((((((((......))).((.(((((........-....--...............))))).)))))))).... ( -15.13)
>DroSim_CAF1 104102 94 - 1
AUGUAU----AAAAAAACUUCAAACAAACAGCAGCCAAAAAGCUUUGAAGGGUUUUCCCUC-UCAC--UUUUUCUCAUUUUUUACCCUGCAGCUGUUACCG
......----................(((((((((......))).(((((((....)))).-))).--.......................)))))).... ( -15.90)
>DroEre_CAF1 130022 88 - 1
A---AA----AAAACAACUUCAAACAAACAGCAGCCAAAAAGCUUUGAAGGGUUUUCCCUC-UCAC--U---UCUCAUAUUUUACCCUGCAGCUGUUACCG
.---..----................(((((((((......))).(((((((....)))).-))).--.---...................)))))).... ( -15.90)
>DroYak_CAF1 130848 89 - 1
A---A-------AAAAACUUCAAACAAACAGCAGCCAAAAAGCUUUGAAGGGUUUUCCCUUUUCAC--UUUUUCUCAUUUUUCACCCUGCAGCUGUUACCG
.---.-------..............((((((.((.((((((....((((((....))))))...)--)))))...............)).)))))).... ( -16.59)
>consensus
AUGUAU____AAAAAAACUUCAAACAAACAGCAGCCAAAAAGCUUUGAAGGGUUUUCCCUC_UCAC__UUUUUCUCAUUUUUUACCCUGCAGCUGUUACCG
..........................(((((((((......))).((.(((((..............................))))).)))))))).... (-14.87 = -14.87 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:37 2006