Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,227,563 – 8,227,666 |
Length | 103 |
Max. P | 0.913585 |
Location | 8,227,563 – 8,227,666 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 82.77 |
Mean single sequence MFE | -34.42 |
Consensus MFE | -24.12 |
Energy contribution | -24.48 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.33 |
Mean z-score | -2.24 |
Structure conservation index | 0.70 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913585 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8227563 103 + 22224390 UCC-----CACAUUCCUGUGCGGUUUUUUCGUUCACCGCG-CUCACUGGCUCUUUUGUCAGUUC--CUUGACAAGCCCUGGGCCAGAAUCU---CGUCCAGCUUAAGGAGCCAG ...-----.........(((((((..........))))))-)...((((((((((((((((...--.)))))))...((((((.((...))---.))))))....))))))))) ( -36.90) >DroSec_CAF1 128599 102 + 1 UCC-----CACAUUCCUGUGCGGUUUUUU-GUUCGCCGCG-CUCACUGGCUCUUUUGUCAGUUC--CUUGACAAGCCCUGGGCCAGAAUCU---CGUCCAGCUUAAGGAGCCAG ...-----.........(((((((.....-....))))))-)...((((((((((((((((...--.)))))))...((((((.((...))---.))))))....))))))))) ( -37.30) >DroEre_CAF1 117841 102 + 1 UUC-----CACAUUCCUGUGUGGUUUUUU-GUUCGCCGCG-CUCCCUGGCGCUUUUGUCAGUUC--CUUGACAGGGAUUGGGCCAGAAUCU---CGUCCAGCUUAAGGAGCCGG ..(-----(((((....))))))......-.....(((.(-((((((((((.((((((((((((--((....)))))))))..)))))...---)).)))).....)))))))) ( -35.60) >DroYak_CAF1 119205 103 + 1 UUC-----CACAUUCCUGUGCGGUUUUUU-GCUCGCCGCGACUCUCUGGCUCUUUUGUCAGUUC--CUUGACAAGGCCUGCACCAGAAUCU---CGUCCAGCUUAAGGAGCCAG ...-----..........((((((.....-....)))))).....((((((((((((((((...--.))))))((((.((.((.((...))---.)).)))))))))))))))) ( -29.50) >DroAna_CAF1 180004 107 + 1 UCCCCUCGCACAUUCCUGUGCGGUUUU-U-GUUCACUUUG-GGCC----CUCUUUUGUCAAAAACUCGUGACAAGGUCUGGGCCAGAAUCUCCCCGUCCGGCUUAAGGCGCCCG .....(((((((....)))))))....-.-.........(-((((----((....(((((........)))))(((.((((((..(......)..))))))))).))).)))). ( -32.80) >consensus UCC_____CACAUUCCUGUGCGGUUUUUU_GUUCGCCGCG_CUCACUGGCUCUUUUGUCAGUUC__CUUGACAAGGCCUGGGCCAGAAUCU___CGUCCAGCUUAAGGAGCCAG ...................(((((..........)))))......((((((((((((((((......)))))))...((((((............))))))....))))))))) (-24.12 = -24.48 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:28 2006