Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,212,986 – 8,213,100 |
Length | 114 |
Max. P | 0.725325 |
Location | 8,212,986 – 8,213,100 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 93.60 |
Mean single sequence MFE | -30.45 |
Consensus MFE | -27.44 |
Energy contribution | -27.25 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -1.57 |
Structure conservation index | 0.90 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8212986 114 - 22224390 GCUGGCAUAAUUGUGGCUAACUGCGGUUAGCAUUAAUGACUGUCAAUUGCCACUUACCUUAUUGGCUGAAAUAGAUGCGUAAACUUCACUCAGCAG-AUGCUUACCAAAGCAUAA ((((((((....(((((.....(((((((.......))))))).....)))))(((((.....)).))).....))))((.......)).))))..-((((((....)))))).. ( -29.80) >DroSec_CAF1 114426 114 - 1 GCUGGCGUAAUUGUGGCUAACUGCGGUUAGCAUUAAUGACUGUCAAUUGCCACUUACCUUAUUGGCUGAAAUAGAUGCGUAAACUUCACUCAGCAG-AUGCUCACCAAAGCAUAA (((((((((...(((((.....(((((((.......))))))).....)))))(((((.....)).)))......)))))..........))))..-(((((......))))).. ( -28.60) >DroEre_CAF1 104476 114 - 1 GCUGGCGUAAUUGUGGCUUACUGCGGUUAGCAUUAAUGACUGUCAAUAGCCACUUACCUUAUUGGCUGAAAUAGAUGCGUAAGCUUCACUCAGCAG-AUGCUCUCUAGUGCAUAU (((((.((((..((((((....(((((((.......)))))))....))))))))))..((((.(((((....((.((....)).))..))))).)-)))....)))))...... ( -33.90) >DroYak_CAF1 105024 115 - 1 GCUGGCGUAAUUGUGGCUAACUGCGGUUAGCAUUAAUGACUGUCAAUUGCCACUUACCUUAUUGGCUGAAUUAGAUGCGUAAACUUCACUCAGCACUAUGCUCUCCCAAGCAUAU (((((((((...(((((.....(((((((.......))))))).....)))))(((((.....)).)))......)))))..........))))..((((((......)))))). ( -29.50) >consensus GCUGGCGUAAUUGUGGCUAACUGCGGUUAGCAUUAAUGACUGUCAAUUGCCACUUACCUUAUUGGCUGAAAUAGAUGCGUAAACUUCACUCAGCAG_AUGCUCACCAAAGCAUAA ((((((((....(((((.....(((((((.......))))))).....)))))(((((.....)).))).....))))((.......)).))))...((((........)))).. (-27.44 = -27.25 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:19 2006