Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,204,752 – 8,204,846 |
Length | 94 |
Max. P | 0.507701 |
Location | 8,204,752 – 8,204,846 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 97.66 |
Mean single sequence MFE | -17.04 |
Consensus MFE | -15.78 |
Energy contribution | -16.74 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.05 |
Mean z-score | -1.17 |
Structure conservation index | 0.93 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507701 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8204752 94 + 22224390 UUUCAGCUAGAACAAAACUCAAUUAACAUUCGAGAGGAUAAACUGUUGAGGAGACAACAAAGUCAAAGAGCCGAGCACACAUGCACUUCAAAAG ..((.(((.........((((((....((((....)))).....))))))..(((......)))....))).))(((....))).......... ( -18.10) >DroSec_CAF1 106678 94 + 1 UUUCAGCUAGAACAAAACUCAAUUAACAUUCGAGAGGAUAAACUGUUGAGGAGACAACAAAGUCAAAGAGCCGAGCACACAUGCACUUCAAAAG ..((.(((.........((((((....((((....)))).....))))))..(((......)))....))).))(((....))).......... ( -18.10) >DroSim_CAF1 86483 94 + 1 UUUCAGCUAGAACAAAACUCAAUUAACAUUCGAGAGGAUAAACUGUUGAGGAGACAACAAAGUCAAAGAGCCGAGCACACAUGCACUUCAAAAG ..((.(((.........((((((....((((....)))).....))))))..(((......)))....))).))(((....))).......... ( -18.10) >DroEre_CAF1 96867 94 + 1 UUUCAGCUAGAACAAAACUCAAUUAACAUUUGAGAGGAUAAACUGUUGAGGAGACAGCAUAGUCAAAGAGCCGAGCACACAUGCACUUCAAAGG ..((.(((.........((((((....((((....)))).....))))))..(((......)))....))).))(((....))).......... ( -16.20) >DroYak_CAF1 96869 94 + 1 UUUCAGCUAGAACAAAACUCAAUUAACAUUUGAGAGGAUAAACUGUCGAGGAGACAACAAAGUCAAAGAGCCGAGCACACAUGCACUUCAAAAG ..((.(((.........(((((.......)))))..(((....((((.....)))).....)))....))).))(((....))).......... ( -14.70) >consensus UUUCAGCUAGAACAAAACUCAAUUAACAUUCGAGAGGAUAAACUGUUGAGGAGACAACAAAGUCAAAGAGCCGAGCACACAUGCACUUCAAAAG ..((.(((.........((((((....((((....)))).....))))))..(((......)))....))).))(((....))).......... (-15.78 = -16.74 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:17 2006