Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,203,528 – 8,203,702 |
Length | 174 |
Max. P | 0.738553 |
Location | 8,203,528 – 8,203,640 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 93.39 |
Mean single sequence MFE | -29.62 |
Consensus MFE | -22.20 |
Energy contribution | -22.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.12 |
Structure conservation index | 0.75 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738553 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8203528 112 + 22224390 UGUUAUGCUAAGGAUUCAUUUUUGCAUAUGCUUCUUAGUCUCAUCCGAACCGAGAUUCCUCGCAUUAGUCUUGGGCACCGUCUCAGCGCCAGUCGCUUAUCCUUAGUAAAUA .....((((((((((.......(((....(((....)))..........((((((((.........))))))))))).......((((.....)))).)))))))))).... ( -25.50) >DroSec_CAF1 105504 112 + 1 UGUUAUGCUAAGGAUUCAUUUUUGCAUAUGCUUCUUAGUCUCAUCCGAACCGAGAUGCCUCGCAUUAGUCGCUGGCAGCGUCUCAGCGCCAGUCGCUCAUCCUUAGUAAAUA .....((((((((((.......(((....((.(((..((.((....))))..))).))...)))..(((.((((((.((......)))))))).))).)))))))))).... ( -35.90) >DroSim_CAF1 85299 112 + 1 UGUUAUGCUAAGGAUUCAUUUUUGCAUAUGCUUCUUAGUCUCAUCCGAACCGAGAUGCCUCGCAUUAGUCGCUGGCAUCGUCUCAGCGCCAGUCGCUCAUCCUUAGUAAAUA .....((((((((((.......(((....((.(((..((.((....))))..))).))...)))..(((.((((((...........)))))).))).)))))))))).... ( -32.00) >DroEre_CAF1 95792 112 + 1 UGCUAUGCUAAGGAUUCAUUUUUGCAUAUGCUUCUUAGUCUCAUCCGAACUGAGAUUCCUUGCAUUAGUCUUAGGAGCCGUCUAAGCGCCAGUCGCUCAUCCUUAGUAAAUA .....((((((((((..(((..((((...(..(((((((.((....)))))))))..)..))))..))).....((((.(.((.......)).))))))))))))))).... ( -30.10) >DroYak_CAF1 95634 112 + 1 UGUUAUGCUAAGGAUUCAUUUUUGCAUAUGCUUCUUAGUCUCAUCCUAACGGAGAUUUCUCGCAUUAGUCUUAGGAACCGUCUCAGCGCCAGUCGCUCAUCCUUAGUAAAUA .....((((((((((............(((.(((((((.....(((....)))((((.........))))))))))).)))...((((.....)))).)))))))))).... ( -24.60) >consensus UGUUAUGCUAAGGAUUCAUUUUUGCAUAUGCUUCUUAGUCUCAUCCGAACCGAGAUUCCUCGCAUUAGUCUUAGGCACCGUCUCAGCGCCAGUCGCUCAUCCUUAGUAAAUA .....((((((((((........((..((((......(((((.........))))).....))))..))...............((((.....)))).)))))))))).... (-22.20 = -22.20 + -0.00)
Location | 8,203,600 – 8,203,702 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.53 |
Mean single sequence MFE | -30.40 |
Consensus MFE | -22.19 |
Energy contribution | -22.88 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.07 |
Mean z-score | -1.58 |
Structure conservation index | 0.73 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618159 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8203600 102 - 22224390 ------ACACAG------U------CCAGUGUCCAGCGUCCAAUGUCCAGGACAAUUAUUCAAAAUGUAUUUGCCAAGGAUAUUUACUAAGGAUAAGCGACUGGCGCUGAGACGGUGCCC ------.(((.(------(------((((((.((((((((((((((((.((.(((.(((.......))).)))))..)))))))......))....))).))))))))).))).)))... ( -32.90) >DroSec_CAF1 105576 102 - 1 ------ACACAG------U------CCAAUGUCCAGCGUCCAAUGUCCAGGACAAUUAUUCAAAAUGUAUUUGCCAAGGAUAUUUACUAAGGAUGAGCGACUGGCGCUGAGACGCUGCCA ------......------.------........(((((((.(((((((.((.(((.(((.......))).)))))..))))))).........(.((((.....)))).))))))))... ( -26.20) >DroSim_CAF1 85371 102 - 1 ------ACACAG------U------CCAGUGUCCAGCGUCCAAUGUCCAGGACAAUUAUUCAAAAUGUAUUUGCCAAGGAUAUUUACUAAGGAUGAGCGACUGGCGCUGAGACGAUGCCA ------.((..(------(------((((((.((((((((((((((((.((.(((.(((.......))).)))))..)))))))......))))).....))))))))).)))..))... ( -31.10) >DroEre_CAF1 95864 120 - 1 AAGUCCAGUGUCCAGUGUCCAGUGUCCAGUGUCCAAUGUCCAAUGUCCAGGACAAUUAUUCAAAAUGUAUUUGCCAAGGAUAUUUACUAAGGAUGAGCGACUGGCGCUUAGACGGCUCCU ..(((.((((.(((((((((((((...(((((((..(((((........)))))......((((.....))))....)))))))))))..)))).....)))))))))..)))....... ( -31.40) >consensus ______ACACAG______U______CCAGUGUCCAGCGUCCAAUGUCCAGGACAAUUAUUCAAAAUGUAUUUGCCAAGGAUAUUUACUAAGGAUGAGCGACUGGCGCUGAGACGGUGCCA ..............................(((...((((((((((((.((.(((.(((.......))).)))))..)))))))......)))))...))).((((((.....)))))). (-22.19 = -22.88 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:17 2006