Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 983,643 – 983,738 |
Length | 95 |
Max. P | 0.586817 |
Location | 983,643 – 983,738 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 82.23 |
Mean single sequence MFE | -24.13 |
Consensus MFE | -16.63 |
Energy contribution | -17.68 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.14 |
Mean z-score | -1.59 |
Structure conservation index | 0.69 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586817 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 983643 95 + 22224390 CCAAGCUGAAGUCGCAGUCGAAAAUGCAAAAUGCAAAAUGCAGGGCUUCAGUCCCAGCAACAAAAAGCUUUUUGGCCAUUUGCCCUCAGUUUGC----C .((((((((.(..(((((((((((.((....(((.....)))((((....))))............))))))))))....))).))))))))).----. ( -26.30) >DroSec_CAF1 66382 95 + 1 CCAAGCUGAAGUCGCAGUCGAAAAUGCAAAAUGCAAAAUGCAGGGCUUCAGUUCCAGCAACAAAAAGCUUUUUGGCCAUUUGCCCUCAGUUUGC----C ...(((((((((((((........)))....(((.....))).))))))))))...........(((((....(((.....)))...)))))..----. ( -24.10) >DroSim_CAF1 45605 95 + 1 CCAAGCUGAAGUCGCAGUCGAAAAUGCAAAAUGCAAAAUGCAGGGCUUCAGUUCCAGCAACAAAAAGCUUUUUGGCCAUUUGCCCUCAGUUUGC----C ...(((((((((((((........)))....(((.....))).))))))))))...........(((((....(((.....)))...)))))..----. ( -24.10) >DroEre_CAF1 79753 88 + 1 CCAAGCUGAAGUCGUAGUCGAAAAUGCA-------AAAUGCAGGGCUUCAGCCCCAGGAACAAAAAGCUCUUUGGCCAUUUGCCCUCAGUUUGC----C .((((((((..(((....)))...(((.-------....)))((((....(((..((((.(.....).)))).))).....)))))))))))).----. ( -25.10) >DroYak_CAF1 71966 88 + 1 CCAAGCUGAAGUCGUAGUCGAAAAUGCA-------AAAUGCAGGGCUUCAGCCCCAGCAACAAAAAGCUUUUUGGCCAUUUGCCCUCAGUUGGC----C ((((.((((..(((....)))....(((-------((.(((.((((....))))..))).......(((....)))..)))))..)))))))).----. ( -24.60) >DroAna_CAF1 58634 82 + 1 ----ACUGAAGCCUUAGCCCGAAAUGCA--------GCUGCAG-----CCGCCACAGCAGCAAAAAGCUUUUUGGCAAUUUGCCUUCAAAUCGCUUCUC ----...(((((....(((.((((.((.--------(((((..-----........))))).....)))))).))).(((((....))))).))))).. ( -20.60) >consensus CCAAGCUGAAGUCGCAGUCGAAAAUGCA_______AAAUGCAGGGCUUCAGCCCCAGCAACAAAAAGCUUUUUGGCCAUUUGCCCUCAGUUUGC____C .((((((((...............((((..........))))((((....(((..(((........)))....))).....))))))))))))...... (-16.63 = -17.68 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:17 2006