Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,198,688 – 8,198,778 |
Length | 90 |
Max. P | 0.805614 |
Location | 8,198,688 – 8,198,778 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 83.86 |
Mean single sequence MFE | -19.37 |
Consensus MFE | -18.67 |
Energy contribution | -18.83 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.44 |
Structure conservation index | 0.96 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805614 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8198688 90 - 22224390 GGCUAAAAGCGCGCAAUUUGCAUAGUUGUAAGUUGCAUGUUUGUUGUCAUAAGUUUCUCGCUAUUCUAUGUUUUUUAUCCACACCCAUAC--------------- (((...(((((.((((((((((....)))))))))).)))))...)))..........................................--------------- ( -19.50) >DroSec_CAF1 100911 88 - 1 GUCUAAAAGCGCGCAAUUUGCAUAGUUGUAAGUUGCAUGUUUGUUGUCAUAAGUUUCUCGCUAUUCUAUGUUUUUUAUCCACACCCAU----------------- .......((((.((((((((((....))))))))))(((........)))........))))..........................----------------- ( -16.30) >DroSim_CAF1 80660 88 - 1 GGCUAAAAGCGCGCAAUUUGCAUAGUUGUAAGUUGCAUGUUUGUUGUCAUAAGUUUCUCGCUAUUCUAUGUUUUUUAUCCACACCCAU----------------- (((...(((((.((((((((((....)))))))))).)))))...)))........................................----------------- ( -19.50) >DroEre_CAF1 91005 89 - 1 GGCUAAAAGCGCGCAAUUUGCAUAGUUGUAAGUUGCAUGUUUGUUGUCAUAAGUUUCUCGCUAUUCUAUGUUU-UUACCCAUACCCACGC--------------- ((.((((((((.((((((((((....))))))))))(((........)))..................)))))-))).))..........--------------- ( -20.10) >DroYak_CAF1 90145 105 - 1 GGCUAAAAGCGCGCAAUUUGCAUAGUUGUAAGUUGCAUGUUUGUUGUCAUAAGUUUCUCGCUAUUCUAUGUUUUUUACCCAUCCCCAACCCCAUAUCCAUACCCC (((...(((((.((((((((((....)))))))))).)))))...)))......................................................... ( -19.50) >DroAna_CAF1 138944 83 - 1 GGCUUAAAGCGCGCAAUUUGCAUAGUUGUAAGUUGCAUGUUUGUUGUCACAAGUUGCUUUUUGUUUCAGGUCCUUUCC-----CUCAU----------------- (((...(((((.((((((((((....)))))))))).)))))...)))(((((......)))))....((......))-----.....----------------- ( -21.30) >consensus GGCUAAAAGCGCGCAAUUUGCAUAGUUGUAAGUUGCAUGUUUGUUGUCAUAAGUUUCUCGCUAUUCUAUGUUUUUUACCCACACCCAU_________________ (((...(((((.((((((((((....)))))))))).)))))...)))......................................................... (-18.67 = -18.83 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:12 2006