Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,191,442 – 8,191,556 |
Length | 114 |
Max. P | 0.797819 |
Location | 8,191,442 – 8,191,556 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 66.96 |
Mean single sequence MFE | -16.23 |
Consensus MFE | -8.20 |
Energy contribution | -7.00 |
Covariance contribution | -1.21 |
Combinations/Pair | 1.36 |
Mean z-score | -1.79 |
Structure conservation index | 0.51 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797819 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8191442 114 - 22224390 UACAUUUUAUAUCAAACUCAUUGUCUUGAAAUAUAACUUCCUUUGGCACUCACUCAAUUCAAUUGAAGAUAUACACAGCUAUUAAGCAAUCAAAUGCUUAUAUCAAGGCACAUA--- .....................((((((((..((((.((((..((((............))))..)))).)))).........((((((......))))))..))))))))....--- ( -20.10) >DroSec_CAF1 93892 99 - 1 UACUUUUUAUAUCAACCUUAUUCUCUUGGAAAGCAACUUUCUUUGGCAAUCAAUCAAUUCAAUUAAAGAUAUAC-------------AAUCAAAUGCUUAUAU--AAGCACAUA--- .......((((((..............((((((...))))))((((.......))))..........)))))).-------------.......(((((....--)))))....--- ( -9.90) >DroYak_CAF1 82606 105 - 1 UGCUUUUUAUAUCAAGCCCUUGCUGUUGAAAUGCAACUUCCUUUGGCACUUACUCAGUUUAGCUGAAGGCUCACAUUUAUAUU----------AUGUUUAUAU--AAACAUAUAAGC (((.(((((.....(((....)))..))))).)))....((((..(((((.....)))...))..)))).............(----------((((((....--)))))))..... ( -18.70) >consensus UACUUUUUAUAUCAAACUCAUUCUCUUGAAAUGCAACUUCCUUUGGCACUCACUCAAUUCAAUUGAAGAUAUACA____UAUU____AAUCAAAUGCUUAUAU__AAGCACAUA___ (((((((((.................))))))))).((((..((((............))))..))))..........................(((((......)))))....... ( -8.20 = -7.00 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:09 2006