Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,179,303 – 8,179,393 |
Length | 90 |
Max. P | 0.566904 |
Location | 8,179,303 – 8,179,393 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 81.46 |
Mean single sequence MFE | -21.62 |
Consensus MFE | -15.22 |
Energy contribution | -14.94 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.22 |
Mean z-score | -1.35 |
Structure conservation index | 0.70 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.566904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8179303 90 + 22224390 UCUG-------GCUGCUCUGCUCCAAAUGAUGCUGCGUCAUCAACAUAAUCAUCGGGCAUCAACAUUUCAAAUUGAGCGGCAUUAUUGGCCCGCCGG .(((-------((.((...)).((((.((((((((((((................))).((((.........)))))))))))))))))...))))) ( -23.39) >DroPse_CAF1 85034 97 + 1 ACUGGCUCAAAGCUCAGAUGCUCCAAAUGGUGCUGCGUCAUCAACAUAAUCAUCAGACAUCAACAUUUCAAAUUGAGCAGCAUUAUUGGCCCACCCA .(((((.....)).))).((..((((.((((((((((((................))).((((.........)))))))))))))))))..)).... ( -23.89) >DroSim_CAF1 64970 90 + 1 UCUG-------GCUGCUCUGCUCCAAAUGAUGCUGCGUCAUCAACAUAAUCAUCGGGCAUCAACAUUUCAAAUUGAGCGGCAUUAUUGGCCCGUCGG .(((-------((.((...)).((((.((((((((((((................))).((((.........)))))))))))))))))...))))) ( -20.69) >DroEre_CAF1 72599 85 + 1 UUUG-------GGUG-----CUUCAAAUGAUGCUGCGUCAUCAACAUAAUCAUCGGGCAUCAACUUUUCAAAUUGCGCGGCAUUAUUGGCCCGUCGG ....-------((.(-----((...(((((((((((((.....))...........(((..............)))))))))))))))))))..... ( -21.24) >DroYak_CAF1 70414 75 + 1 UCUG-------GGUG-----CUCCAAAUGAUGCUGCGUCAUCAACAUAAUCAUCGGGCAUCAACAUUUCAAAUUGCGCGGCAUUAUU---------- ..((-------(...-----..)))(((((((((((((.....))...........(((..............))))))))))))))---------- ( -16.64) >DroPer_CAF1 84681 97 + 1 ACUGGCUCAAAGCUCAGAUGCUCCAAAUGGUGCUGCGUCAUCAACAUAAUCAUCAGACAUCAACAUUUCAAAUUGAGCAGCAUUAUUGGCCCACCCA .(((((.....)).))).((..((((.((((((((((((................))).((((.........)))))))))))))))))..)).... ( -23.89) >consensus UCUG_______GCUG___UGCUCCAAAUGAUGCUGCGUCAUCAACAUAAUCAUCGGGCAUCAACAUUUCAAAUUGAGCGGCAUUAUUGGCCCGCCGG ......................((((.((((((((((((................))).....((........)).)))))))))))))........ (-15.22 = -14.94 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:59 2006