Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,169,056 – 8,169,158 |
Length | 102 |
Max. P | 0.506506 |
Location | 8,169,056 – 8,169,158 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 83.10 |
Mean single sequence MFE | -21.32 |
Consensus MFE | -12.46 |
Energy contribution | -12.68 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.30 |
Mean z-score | -2.33 |
Structure conservation index | 0.58 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506506 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8169056 102 - 22224390 C-------------CGUCCUUUUCGCCACAUCUUCCCCUUCAAUCGCUUUAUAUCAUUUGCGAUUUAUUGAAAUUGCUUGAAGCCAGC--GGACUCGGGACUUU-UCCCAUUUUCCUC .-------------.((((...................(((((((((............)))))....))))...(((.......)))--))))..((((....-))))......... ( -19.10) >DroSec_CAF1 72420 102 - 1 C-------------CGUCCUUUUCGCCACAUCUUCCCCUUCAAUCGCUUUAUAUCAUUUGCGAUUUAUUGAAAUUGCUUGAAGCCAGC--GGAUUCGGGACUUU-UCCCAUUUUCCUC .-------------.(((((.(((((............(((((((((............)))))....))))...((.....))..))--)))...)))))...-............. ( -19.20) >DroSim_CAF1 54469 102 - 1 C-------------CGUCCUUUUCGCCACAUCUUCCCCUUCAAUCGCUUUAUAUCAUUUGCGAUUUAUUGAAAUUGCUUGAAGCCAGC--GGACUCGGGACUUU-UCCCAUUUUCCUC .-------------.((((...................(((((((((............)))))....))))...(((.......)))--))))..((((....-))))......... ( -19.10) >DroEre_CAF1 62059 101 - 1 C-------------CAUCCCUUCCGCCACAUCUUCCCCUGCAAUCGCUUUAUAUCAUUUGCGAUUUAUUGAAAUUGCUUGAGGCCAGC--GGACUCGGGACUUU--UCCAUUUUCCUU .-------------..((((.(((((.....((((....(((((..(..((.(((......))).))..)..)))))..))))...))--)))...))))....--............ ( -23.40) >DroYak_CAF1 59996 101 - 1 C-------------CAUCCUUUUCGCCACAUCUUCCCCUUCAAUCGCUUUAUAUCAUUUGCGAUUUAUUGAAAUUGCUUACAGCCAGC--GGACUCGGGACUUU--CCCAUUUUCCUC .-------------.......(((((............(((((((((............)))))....))))...((.....))..))--)))...(((.....--)))......... ( -16.40) >DroAna_CAF1 99398 112 - 1 CCAUCUCGGAGAAAAGUCCUUGUUGGCCCGCGUU---CUUCCACAGCUUUAUAUCAUUUGCAAUUUAUUGAAAUUGCUUGAAGCCAGCCAGAAUUGAGGGGUUUUUCUCUUU---CUU .......((((((((..((((((((((..((...---........))......(((...(((((((....))))))).))).))))))........))))..))))))))..---... ( -30.70) >consensus C_____________CGUCCUUUUCGCCACAUCUUCCCCUUCAAUCGCUUUAUAUCAUUUGCGAUUUAUUGAAAUUGCUUGAAGCCAGC__GGACUCGGGACUUU_UCCCAUUUUCCUC .............................................((((((........(((((((....))))))).))))))......(((...((((.....))))....))).. (-12.46 = -12.68 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:49 2006