Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,167,318 – 8,167,425 |
Length | 107 |
Max. P | 0.604665 |
Location | 8,167,318 – 8,167,425 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 75.54 |
Mean single sequence MFE | -25.51 |
Consensus MFE | -8.17 |
Energy contribution | -9.13 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.35 |
Mean z-score | -1.77 |
Structure conservation index | 0.32 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8167318 107 - 22224390 GAACUGUGACGUUUAGGAGAUGUCAGUUGAUUUACAUCAAUCGCUUUCGCCUUAUG----------AUC-GUAAAUAAAUAAAACGAUACGAGAGCAAAUGUGAAUGUCAUUUGGAUU ...((((((((((((.(.(((((.((.....)))))))....(((((((.......----------(((-((...........))))).)))))))...).))))))))))..))... ( -25.00) >DroSec_CAF1 70706 106 - 1 GAACU--GGCGUUCACGAGAUGUCAGUCGAUUUACAUCAAUCGCUUUUGCCUUAUG----------AUGAAUAAAUAAAUAAAACGAUACGGUAGCAAAUGUGAAUGUCAUGUGGAUU ((.((--((((((.....))))))))))(((((((((((.((((.(((((.((((.----------....)))).........((......)).))))).)))).))..))))))))) ( -24.20) >DroSim_CAF1 52709 106 - 1 GAACU--GGCGUUCGCGAGAUGUCAGUCGAUUUACAUCAAUCGCUUUUGCCUUAUG----------AUGAAUAAAUAAAUAACACGAUACGAGAGCAAAUGUGAAUGUCAUGUGGAUU ((.((--(((((.(....))))))))))(((((((((((.((((.(((((((..((----------.((...............)).))..)).))))).)))).))..))))))))) ( -27.96) >DroEre_CAF1 60392 97 - 1 G-ACU--GGCAUGGAUGUGAUGUCAGUCGAUUUACAUCAAUCG-------AUUAUG----------AUG-GCAAAUAAAUAGAAGGGUACGAAAGCAAAUGCGAAUGCGAUGUGGAUU (-(((--(((((.......)))))))))((((((((((.(((.-------.....)----------)).-(((...........(....)....((....))...))))))))))))) ( -25.80) >DroYak_CAF1 57927 100 - 1 GAACU--GGCAUGCAUGAGAUGUCAUUCGAUUUACAUCGAUCGCUUUCG-AUUAUGUUCGUGAAUUAUG-GUAAAUGAAUAAAACGAU--------------GAAUGCGAUGUGGAUA (((.(--(((((.......))))))))).((((((((((....(..(((-.((.(((((((........-....))))))).))))).--------------)....)))))))))). ( -24.60) >consensus GAACU__GGCGUUCACGAGAUGUCAGUCGAUUUACAUCAAUCGCUUUCGCCUUAUG__________AUG_GUAAAUAAAUAAAACGAUACGAGAGCAAAUGUGAAUGUCAUGUGGAUU .......((((((((((.(((((..........))))).((((........((((...................))))......))))...........))))))))))......... ( -8.17 = -9.13 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:47 2006