Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,148,212 – 8,148,306 |
Length | 94 |
Max. P | 0.962998 |
Location | 8,148,212 – 8,148,306 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 96.38 |
Mean single sequence MFE | -19.56 |
Consensus MFE | -17.46 |
Energy contribution | -17.70 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.70 |
Structure conservation index | 0.89 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.962998 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8148212 94 - 22224390 AAAAUUGCUGAUGGAACGAAUGCACUUCCGGGUUAAUAUUCAAACGGCAAGUGUACACAAAAAAGCUGAGCAAGCUUGGCAAAAACUAGAUAAU ....(((((...........((((((((((..(........)..))).))))))).......(((((.....))))))))))............ ( -20.70) >DroSec_CAF1 51827 94 - 1 AAAAUUGCUGAUGGAACGAAUGCACUUCCGGGUUAAUAUUCAAACAGCAAGUGCACACAAAAAAGCUGAGCUAGCUUGGCACAAACUAGAUAAU ....((((((..((((.(......)))))((((....))))...))))))((((........((((((...)))))).))))............ ( -20.10) >DroSim_CAF1 33122 94 - 1 AAAAUUGCUGAUGGAACGAAUGCACUUCCGGGUUAAUAUUCAAACAGCAAGUGCACACAAAAAAGCUGAGCUAGCUUGGCAAAAACUAGAUAAU ....((((((..((((.(......)))))((((....))))...))))))..............((..((....))..)).............. ( -18.80) >DroEre_CAF1 42364 93 - 1 AAAAUUGCUGAUGGAAUGAAUGCACUUCCGGGUUAAUAUUCAAACAGCAAGUGCACACAAAAAAGCUGAGCAAGCUU-GCAAAAACUAGAUAAU ....((((........((..(((((((.(..(((........))).).)))))))..))...(((((.....)))))-))))............ ( -18.50) >DroYak_CAF1 39191 94 - 1 AAAAUUGCUGAUGGAAUGAAUGCACUUCCGGGUUAAUAUUCAAACAGCAAGUGCACACAAAAAAGCUGAGCCAGCUGGGCAAAAACUAGAUAAU ....(((((.......((..(((((((.(..(((........))).).)))))))..))....(((((...))))).)))))............ ( -19.70) >consensus AAAAUUGCUGAUGGAACGAAUGCACUUCCGGGUUAAUAUUCAAACAGCAAGUGCACACAAAAAAGCUGAGCAAGCUUGGCAAAAACUAGAUAAU ....((((((..((((.(......)))))((((....))))...))))))..............((((((....)))))).............. (-17.46 = -17.70 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:43 2006