Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,144,502 – 8,144,614 |
Length | 112 |
Max. P | 0.998382 |
Location | 8,144,502 – 8,144,614 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 74.30 |
Mean single sequence MFE | -36.12 |
Consensus MFE | -21.22 |
Energy contribution | -23.14 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.31 |
Mean z-score | -2.65 |
Structure conservation index | 0.59 |
SVM decision value | 3.08 |
SVM RNA-class probability | 0.998382 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8144502 112 + 22224390 UUAUAGCUCUCGGCUGACGAAAGGUCUUAGCAUGCCGUUGAUACCCUGACCCUCCAGGGUAUUACAACUUUGUCAGCAGUUUUGCAAACGGCGGCUAUGAGAUCAGGUAUUC ((((((((.((((((((((((.(((........)))((((((((((((......))))))))..))))))))))))).(.....)...))).))))))))............ ( -40.80) >DroSec_CAF1 47932 111 + 1 UUACAGCUCUCGGCUGGCGAAAGGUCCUAGCAUGCCGUUGAUACCCUGGC-CUCCAGGGUAUUAUAACUUUGUUAGCAGUUAUGCAAACGGCGGCUAUGGGAUCAGGUAUUC ...((((.....))))......(((((((((.(((((((((((((((((.-..))))))))))............(((....))).))))))))))..))))))........ ( -45.30) >DroSim_CAF1 29288 111 + 1 UUACAGCUCUCGGCUGGCGAAAGGUCUUAGCAUGCCGUUGAUACCCUGGC-CUCCAGGGUAUUAUAACUUUGUUAGCAGUUUUACAAACGGCGGCUAUGGUAUCAGGUAUUC ...((((.....))))......(((((((((.(((((((((((((((((.-..)))))))))).(((..(((....)))..)))..))))))))))).)).)))........ ( -37.60) >DroEre_CAF1 38549 92 + 1 UUACAGCCCCCGGUUGGCAAAAGGUCUUAGCAAGCCGUUGAUACCCUGGC-CUUCGGGGUAUUAUAACUUUGUGGG------------------CUCUGUGACCAGGU-UUU ...(((((...)))))......((((.(((..((((..((((((((((..-...))))))))))...(.....)))------------------))))).))))....-... ( -30.10) >DroYak_CAF1 35199 86 + 1 UUACAGCUCUCGGU------------------------UGAUACCCUGGC-CUUCAGGGUAUUAUAGCUUUGUUAGCAGUUUUGUC-ACGGCGUCUCUGUGACCAGGUAUUU .(((.(((..(((.------------------------((((((((((..-...)))))))))).....)))..)))......(((-((((.....)))))))...)))... ( -26.80) >consensus UUACAGCUCUCGGCUGGCGAAAGGUCUUAGCAUGCCGUUGAUACCCUGGC_CUCCAGGGUAUUAUAACUUUGUUAGCAGUUUUGCAAACGGCGGCUAUGGGAUCAGGUAUUC ...((((.....))))......(((((((.........(((((((((((....))))))))))).........((((.(((........))).)))))))))))........ (-21.22 = -23.14 + 1.92)
Location | 8,144,502 – 8,144,614 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 74.30 |
Mean single sequence MFE | -29.80 |
Consensus MFE | -14.78 |
Energy contribution | -15.64 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.17 |
Mean z-score | -1.79 |
Structure conservation index | 0.50 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8144502 112 - 22224390 GAAUACCUGAUCUCAUAGCCGCCGUUUGCAAAACUGCUGACAAAGUUGUAAUACCCUGGAGGGUCAGGGUAUCAACGGCAUGCUAAGACCUUUCGUCAGCCGAGAGCUAUAA ..........((((.((((.((((((.(((....))).)))...((((..(((((((((....))))))))))))))))..)))).(((.....)))....))))....... ( -36.20) >DroSec_CAF1 47932 111 - 1 GAAUACCUGAUCCCAUAGCCGCCGUUUGCAUAACUGCUAACAAAGUUAUAAUACCCUGGAG-GCCAGGGUAUCAACGGCAUGCUAGGACCUUUCGCCAGCCGAGAGCUGUAA ...(((......((.((((.((((((...((((((........)))))).(((((((((..-.))))))))).))))))..))))))..((((((.....))))))..))). ( -36.80) >DroSim_CAF1 29288 111 - 1 GAAUACCUGAUACCAUAGCCGCCGUUUGUAAAACUGCUAACAAAGUUAUAAUACCCUGGAG-GCCAGGGUAUCAACGGCAUGCUAAGACCUUUCGCCAGCCGAGAGCUGUAA ..........(((..((((.((((((.....((((........))))...(((((((((..-.))))))))).))))))..))))....((((((.....))))))..))). ( -32.00) >DroEre_CAF1 38549 92 - 1 AAA-ACCUGGUCACAGAG------------------CCCACAAAGUUAUAAUACCCCGAAG-GCCAGGGUAUCAACGGCUUGCUAAGACCUUUUGCCAACCGGGGGCUGUAA ...-..(((....)))((------------------(((...........((((((.(...-..).))))))...(((.(((.((((....)))).)))))).))))).... ( -23.80) >DroYak_CAF1 35199 86 - 1 AAAUACCUGGUCACAGAGACGCCGU-GACAAAACUGCUAACAAAGCUAUAAUACCCUGAAG-GCCAGGGUAUCA------------------------ACCGAGAGCUGUAA ...(((...(((((.(.....).))-)))..............((((...((((((((...-..))))))))..------------------------......))))))). ( -20.20) >consensus GAAUACCUGAUCACAUAGCCGCCGUUUGCAAAACUGCUAACAAAGUUAUAAUACCCUGGAG_GCCAGGGUAUCAACGGCAUGCUAAGACCUUUCGCCAGCCGAGAGCUGUAA ...........................................((((...((((((((......))))))))...((((..((...........))..))))..)))).... (-14.78 = -15.64 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:42 2006