Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,118,564 – 8,118,660 |
Length | 96 |
Max. P | 0.610413 |
Location | 8,118,564 – 8,118,660 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 80.09 |
Mean single sequence MFE | -28.45 |
Consensus MFE | -18.29 |
Energy contribution | -18.73 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.15 |
Mean z-score | -1.73 |
Structure conservation index | 0.64 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610413 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8118564 96 + 22224390 CUUUGCGCGCUGUUAACGCUAACAGCACUG-----------UAACAGAAGCGCAGUACUUUGCAGCGGUUCUAUAAUCGAUA---GCCGUUGAUUUCACGUUAUAUUUGC ..(((((((((((((....))))))).(((-----------...)))..)))))).......((((((..((((.....)))---))))))).................. ( -27.40) >DroSec_CAF1 21603 104 + 1 CUUUGCCCGCUGUUAACGCUAACAGCACUGCAACAGAAGCGUAACAGAAGCACAGUACUUUGCAGCGGUUUUAUAAUCGAUA---ACCGCUGAUUUCACGUUACACG--- ((((((..(((((((....)))))))...)))).))..(.(((((.((((.......)))).((((((((...........)---))))))).......))))).).--- ( -29.50) >DroSim_CAF1 10076 104 + 1 CUUUGCCCGCUGUUAACGCUAACAGCGCAGCAACAGAAGCGUAACAGAAGCGCAGUACUUUGCAGCGGUUCUAUAAUCGAUA---ACCGUUGAUUUCACGUUACACG--- ((((((.((((((((....))))))))..)))).))..(.(((((((((.(((.((.....)).))).))))..(((((((.---...)))))))....))))).).--- ( -32.10) >DroEre_CAF1 8957 108 + 1 CUUGGCCCGCUGUUAACGCUAACAGCACUGCAACAUGAGCAUAACAGCAG--UAGUACUUUUCGGCGGUUCUAUAAUCGAUAUACACGUUUGAUAUCACGCUAUUGGUCC ...((((.(((((((..((.....))..(((.......))))))))))((--((((..........((((....))))(((((.((....)))))))..)))))))))). ( -24.80) >consensus CUUUGCCCGCUGUUAACGCUAACAGCACUGCAACAGAAGCGUAACAGAAGCGCAGUACUUUGCAGCGGUUCUAUAAUCGAUA___ACCGUUGAUUUCACGUUACACG___ ........(((((((....)))))))..............(((((.((((.......)))).(((((((..(((.....)))...))))))).......)))))...... (-18.29 = -18.73 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:32 2006