Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,114,841 – 8,114,936 |
Length | 95 |
Max. P | 0.988280 |
Location | 8,114,841 – 8,114,936 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 77.13 |
Mean single sequence MFE | -33.13 |
Consensus MFE | -19.59 |
Energy contribution | -22.03 |
Covariance contribution | 2.45 |
Combinations/Pair | 1.17 |
Mean z-score | -2.75 |
Structure conservation index | 0.59 |
SVM decision value | 2.11 |
SVM RNA-class probability | 0.988280 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8114841 95 + 22224390 CCUCCUCCUCCACGGUCACAUCGUCCUCCACCGCCGCCCGCAUAGCCACCAAGGCUCCCAUUUUGGCGGCUGUUC---------------CGGCUGCCCAGGAGCAAAUC ....(((((....((.(.....).))......((.(((.(.((((((.((((((......)))))).)))))).)---------------.))).))..)))))...... ( -30.30) >DroPse_CAF1 15924 101 + 1 CUUCCUCCUCCGCCG---CCUACUCCUCCUCCACCACCCGCUCAGCCACAAAGCCAACUG------CAGCUGGAGCCCAGCCCGUCCAGUCAGCAGCGCAGGAGCAGAUC ....(((((.(((.(---(..(((...............((...((......)).....)------).(((((...)))))......)))..)).))).)))))...... ( -24.30) >DroSec_CAF1 17850 95 + 1 CCUCCUCCACCACGGUCACAUCCUCCUCCACCGCCGCCCGCACAGCCACCAAGGCUCCCGUUUUGGCGGCUGUUC---------------CGGCUGCCCAGGAGCAGAUC .((.((((.....((......)).........((.(((.(.((((((.(((((((....))))))).)))))).)---------------.))).))...)))).))... ( -36.90) >DroSim_CAF1 5771 93 + 1 --UCCUCUUUAAUUUUAACAUCCUCCUCCACCGCCGCCCGCACAGCCACCAAGGCUCCCGUUUUGGCGGCUGUUC---------------CGGCUGCCCAGGAGCAGAUC --....................((.((((...((.(((.(.((((((.(((((((....))))))).)))))).)---------------.))).))...)))).))... ( -35.60) >DroEre_CAF1 4698 95 + 1 CCUCCUCCUCCGCGGUCACAUCCUCCGCCACCGCCGCCCGCACGGCCACCAAGGCACCCGUUUUGGCCGCUGGAC---------------CGGCUGCCCAGGAGCAGAUC .((.(((((..((((.........))))....((.(((.(..((((..(((((((....)))))))..))))..)---------------.))).))..))))).))... ( -35.50) >DroYak_CAF1 5272 95 + 1 CCUCCUCCUCCGCGGUCACUUCCUCCUCCACCGCCGCCCGCACAGCCACCAAGGCACCCGUUCUGGCGGCUGGAA---------------AGGCUGCUCAGGAGCAGAUC .((.(((((..((((((...............((.....)).(((((.(((..((....))..))).)))))...---------------.))))))..))))).))... ( -36.20) >consensus CCUCCUCCUCCACGGUCACAUCCUCCUCCACCGCCGCCCGCACAGCCACCAAGGCACCCGUUUUGGCGGCUGGAC_______________CGGCUGCCCAGGAGCAGAUC ....(((((...(((((...............((.....)).(((((.(((((((....))))))).)))))...................)))))...)))))...... (-19.59 = -22.03 + 2.45)
Location | 8,114,841 – 8,114,936 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 77.13 |
Mean single sequence MFE | -42.85 |
Consensus MFE | -24.48 |
Energy contribution | -25.54 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.33 |
Mean z-score | -2.18 |
Structure conservation index | 0.57 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938469 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8114841 95 - 22224390 GAUUUGCUCCUGGGCAGCCG---------------GAACAGCCGCCAAAAUGGGAGCCUUGGUGGCUAUGCGGGCGGCGGUGGAGGACGAUGUGACCGUGGAGGAGGAGG ..(((.((((((((((.((.---------------..((.((((((...((((..((....))..))))...)))))).))...))....)))..))).)))).)))... ( -36.20) >DroPse_CAF1 15924 101 - 1 GAUCUGCUCCUGCGCUGCUGACUGGACGGGCUGGGCUCCAGCUG------CAGUUGGCUUUGUGGCUGAGCGGGUGGUGGAGGAGGAGUAGG---CGGCGGAGGAGGAAG ......(((((.(((((((.(((.(((.((((((...)))))).------..)))..(((..(.(((.....))).)..)))....))).))---))))).))))).... ( -42.00) >DroSec_CAF1 17850 95 - 1 GAUCUGCUCCUGGGCAGCCG---------------GAACAGCCGCCAAAACGGGAGCCUUGGUGGCUGUGCGGGCGGCGGUGGAGGAGGAUGUGACCGUGGUGGAGGAGG ......(((((..((.(((.---------------(.(((((((((((..(....)..))))))))))).).))).(((((.(.........).))))).))..))))). ( -43.40) >DroSim_CAF1 5771 93 - 1 GAUCUGCUCCUGGGCAGCCG---------------GAACAGCCGCCAAAACGGGAGCCUUGGUGGCUGUGCGGGCGGCGGUGGAGGAGGAUGUUAAAAUUAAAGAGGA-- ..(((.((((...((.(((.---------------(.(((((((((((..(....)..))))))))))).).))).))...)))).)))...................-- ( -41.40) >DroEre_CAF1 4698 95 - 1 GAUCUGCUCCUGGGCAGCCG---------------GUCCAGCGGCCAAAACGGGUGCCUUGGUGGCCGUGCGGGCGGCGGUGGCGGAGGAUGUGACCGCGGAGGAGGAGG ...((.(((((..((.((((---------------.(((.(((((((...((((...)))).)))))))..)))))))(((.(((.....))).)))))..))))).)). ( -48.40) >DroYak_CAF1 5272 95 - 1 GAUCUGCUCCUGAGCAGCCU---------------UUCCAGCCGCCAGAACGGGUGCCUUGGUGGCUGUGCGGGCGGCGGUGGAGGAGGAAGUGACCGCGGAGGAGGAGG ...((.(((((..((..(((---------------(..(.((((((...((((.(((....))).))))...)))))).)..)))).((......))))..))))).)). ( -45.70) >consensus GAUCUGCUCCUGGGCAGCCG_______________GAACAGCCGCCAAAACGGGAGCCUUGGUGGCUGUGCGGGCGGCGGUGGAGGAGGAUGUGACCGCGGAGGAGGAGG ...((.(((((..((.........................((((((...((((..((....))..))))...))))))(((.............)))))..))))).)). (-24.48 = -25.54 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:31 2006