| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,110,846 – 8,110,936 |
| Length | 90 |
| Max. P | 0.841699 |
| Location | 8,110,846 – 8,110,936 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 79.92 |
| Mean single sequence MFE | -19.55 |
| Consensus MFE | -9.97 |
| Energy contribution | -11.08 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8110846 90 + 22224390 -AUCCAAAUAUCGCAUGUCGCAUUUGCAUGCUGCAGCAGCAUUAAAAACGAGAAAAAAAAUCA-UAAUUUUCAAGUGCGAGAUUUUGAAUUU -...((((..((((((.(((..((((.((((((...))))))))))..)))(((((.......-...)))))..))))))...))))..... ( -20.60) >DroSec_CAF1 1500 87 + 1 -AUCCAAAUAUCGCAUGUCGCAUUUGCAUGCUGCAGCAGCAUUAAAAACGAGAA---AAAUCA-UAAUUUUCAAGUGCGAGAUUUUGAAUUU -...((((..((((((.(((..((((.((((((...))))))))))..)))(((---((....-...)))))..))))))...))))..... ( -21.20) >DroSim_CAF1 1688 87 + 1 -AUCCAAAUAUCGCAUGUCGCAUUUGCAUGCUGCAGCAGCAUUAAAAACGAGAA---AAAUCA-UAAUUUUCAAGUGCGAGAUUUUGAAUUU -...((((..((((((.(((..((((.((((((...))))))))))..)))(((---((....-...)))))..))))))...))))..... ( -21.20) >DroEre_CAF1 1506 87 + 1 -ACCCGAAUAUUGCAUGCCGCAUUUGCAUGCUGCAGCGGCAUUAAAAACGAGAA---AAAUCC-UAAUUUUCAAGUGCGAGAUUUUGCAUUU -...((((..(((((((((((...(((.....))))))))...........(((---((....-...)))))..))))))...))))..... ( -21.50) >DroYak_CAF1 2090 89 + 1 UAUCCGAAUAUUGCAUGCCGCAUUUGCAUGCUGCAGCGGCAUUAAAAUCGAGAA---AAAACCAUCAUUUUCAAGUGCGAGAUUUUCAAUUU .....(((..(((((((((((...(((.....))))))))...........(((---((........)))))..))))))....)))..... ( -22.10) >DroPer_CAF1 13022 68 + 1 -AUUCCAAUGUUGCAUGCCACAUUUGCAUGCACCAGCCACAUAAACAGCAACCA---CAAUC---------CAAGUCCA---U--------U -.......((.(((((((.......))))))).))...................---.....---------........---.--------. ( -10.70) >consensus _AUCCAAAUAUCGCAUGCCGCAUUUGCAUGCUGCAGCAGCAUUAAAAACGAGAA___AAAUCA_UAAUUUUCAAGUGCGAGAUUUUGAAUUU ....((((..((((((...((....))((((((...))))))................................))))))...))))..... ( -9.97 = -11.08 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:29 2006