Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,110,683 – 8,110,786 |
Length | 103 |
Max. P | 0.805369 |
Location | 8,110,683 – 8,110,786 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.20 |
Mean single sequence MFE | -25.32 |
Consensus MFE | -13.55 |
Energy contribution | -14.80 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.11 |
Mean z-score | -1.76 |
Structure conservation index | 0.54 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805369 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8110683 103 + 22224390 GCAACGCCGCCUCCUG---------CACGCUUCAUUAAGUUGGCAACGCCAACGGCGCGCAAUUUGAAUUAAUUGCUAGGCAUAAAUACACACCAGA--------AAAUACCCAGAAAAC ((..((((((.....)---------)............((((((...)))))))))).((((((......))))))...))................--------............... ( -23.60) >DroSec_CAF1 1340 103 + 1 GCAACGCCGCCCCCUG---------CACGCUUCAUUAAGUUGGCAACGCCAACGGCGCGCAAUUUGAAUUAAUUGCUAGGCAUAAAUACACACCAGA--------AAAUACCCAGAAAAC ((..((((((.....)---------)............((((((...)))))))))).((((((......))))))...))................--------............... ( -23.60) >DroSim_CAF1 1527 103 + 1 GCAACGCCGCCCCCUG---------CACGCUUCAUUAAGUUGGCAACGCCAACGGCGCGCAAUUUGAAUUAAUUGCUAGGCAUAAAUACACACCAGA--------AAAUACCCAGAAAAC ((..((((((.....)---------)............((((((...)))))))))).((((((......))))))...))................--------............... ( -23.60) >DroEre_CAF1 1351 99 + 1 GCAACGCCGCC--CUGC--------CACGCUUCAUUAAGUUGGCAACGCCAACGGCGCGCAAUU--AAUUAAUUGCUGAACGUAAAUACAC---------AGCACAAGUAACCAGAAAAC ((..((((((.--....--------...))........((((((...)))))))))).((((((--....))))))...............---------.))................. ( -22.90) >DroYak_CAF1 1916 110 + 1 GCAACGCCGCC--CUGC--------CAUGCUUCAUUAAGUUGGCAGCGCCAACGGCGCGCAAUUUGAAUUAAUUGCUGGGCUUGAAUACACACCAAAUGCAGCGCAAGUAACCAGAAAAC (((.....(((--((((--------((.((((....)))))))))(((((...)))))((((((......)))))).))))(((.........))).))).((....))........... ( -34.00) >DroPer_CAF1 12873 98 + 1 GCAG--GAGCC--CGGCUCAGCUGUUCCAUAUCAUUAAGCUGGCAACGCCAGCG-CGCACUUUUUGAUUCCAUUCGAGAAAUUAAAUUU--ACCAAA--------AGA-------AAAGU ((.(--((((.--.(((...))))))))..........((((((...)))))))-)....(((((((......))))))).........--......--------...-------..... ( -24.20) >consensus GCAACGCCGCC__CUG_________CACGCUUCAUUAAGUUGGCAACGCCAACGGCGCGCAAUUUGAAUUAAUUGCUAGGCAUAAAUACACACCAGA________AAAUACCCAGAAAAC ....((((((..................))........((((((...)))))))))).((((((......))))))............................................ (-13.55 = -14.80 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:28 2006