Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,110,004 – 8,110,107 |
Length | 103 |
Max. P | 0.850659 |
Location | 8,110,004 – 8,110,107 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 91.71 |
Mean single sequence MFE | -25.85 |
Consensus MFE | -21.56 |
Energy contribution | -21.19 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.09 |
Mean z-score | -1.92 |
Structure conservation index | 0.83 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850659 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8110004 103 + 22224390 GCUAAACAGAAUUGGCGAAAUGCGAUUGGGAAACUGGGCGGCCGAGUUGUAAAGUUAAAGUGCGUAAAAGCGUUAAGAGUGUGAAAUUGGCC-----GGCGAAAAGUG (((((......)))))....(((..(..(....)..).(((((((.(..((...((((...((......)).))))...))..)..))))))-----))))....... ( -26.00) >DroSec_CAF1 679 97 + 1 GCUAAACAGAAUUGGCGAAAUGCGAUUGGGAAACUGGGCGGCCGAGU------GUUAAAGUGCGUAAAAGCGUUAAGAGUGUGGAAUUGGCC-----GGCGAAAAGUG (((((......)))))....(((..(..(....)..).(((((((..------.(((....((((....))))........)))..))))))-----))))....... ( -25.00) >DroSim_CAF1 868 97 + 1 GCUAAACAGAAUUGGCGAAAUGCGAUUGGGAAACUGGGCGGCCGAGU------GUUAAAGUGCGUAAAAGCGUUAAGAGUGUGGAAUUGGCC-----GGCGAAAAGUG (((((......)))))....(((..(..(....)..).(((((((..------.(((....((((....))))........)))..))))))-----))))....... ( -25.00) >DroYak_CAF1 1159 102 + 1 GCCAAAGAGAAUUGGCGAAAUGCGAUUGGGAAACUGGGCGGCCGAGU------GUUAAAGUGCGUAAAAGUGUUAAGAGCGUGGAAUUGGCCUGUGCGGCGAAAAGCG (((((......)))))....((((.(..(....)..).)((((((.(------(((..((..(......)..))...)))).....))))))...)))((.....)). ( -27.40) >consensus GCUAAACAGAAUUGGCGAAAUGCGAUUGGGAAACUGGGCGGCCGAGU______GUUAAAGUGCGUAAAAGCGUUAAGAGUGUGGAAUUGGCC_____GGCGAAAAGUG (((((......)))))....((((.(..(....)..).)((((((.........((((...((......)).))))..........))))))......)))....... (-21.56 = -21.19 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:27 2006