Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,107,432 – 8,107,525 |
Length | 93 |
Max. P | 0.996405 |
Location | 8,107,432 – 8,107,525 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 75.27 |
Mean single sequence MFE | -20.67 |
Consensus MFE | -15.93 |
Energy contribution | -16.93 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.77 |
SVM decision value | 2.69 |
SVM RNA-class probability | 0.996405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8107432 93 - 22224390 GGCUCAAAGCGAAAGCGAAUUUU-UUCGUGCCAAUUGCAGUCGAAAAAACACUGCAUUUUUAUUGCAUUUUUGUUGUAUUAUA----UGUGCCCCAUU (((.(...((....))(((....-)))).)))...((((((.(......)))))))........((((...(((......)))----.))))...... ( -20.80) >DroSec_CAF1 12651 91 - 1 GGCACAAAGCGAAAGCGAAUUUU-UUCGUGCCAAUUGCAGUCGAAAAUACACUGCAUUUUUAU------UUUGUUGCAUUAUAUGUAUGUGCCCUAUU ((((((.((((((((((((....-)))))......((((((.(......)))))))......)------))))))((((...)))).))))))..... ( -24.30) >DroEre_CAF1 12097 75 - 1 GCCACAAAGCGAAAGCGAAUUUUUAUCGUGCCAAUUGCAGUCGAAAAUACACUGCAUUUU----------------UAUUUU-----UUCGC--UGCU .......(((((((((((.......))))......((((((.(......)))))))....----------------.....)-----)))))--)... ( -16.90) >consensus GGCACAAAGCGAAAGCGAAUUUU_UUCGUGCCAAUUGCAGUCGAAAAUACACUGCAUUUUUAU______UUUGUUGUAUUAUA____UGUGCCCUAUU (((((...((....))(((.....))))))))...((((((.(......))))))).......................................... (-15.93 = -16.93 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:26 2006