Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,105,705 – 8,105,811 |
Length | 106 |
Max. P | 0.533083 |
Location | 8,105,705 – 8,105,811 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.50 |
Mean single sequence MFE | -27.40 |
Consensus MFE | -15.99 |
Energy contribution | -16.49 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.13 |
Mean z-score | -1.70 |
Structure conservation index | 0.58 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.533083 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8105705 106 + 22224390 CCAAAAGAUAAUCCAGUACGCACGUAUGUACCCAUACGAUUGAGGGGCAAAAGGCGUGCUGUUCAGUUUUGAAAAAACAUUUUAGAUAUUUUUGAAAA--------------GAAGAUUG ........(((((((((((((.(...((..((((......)).))..))...)))))))))(((.((((.....)))).(((((((....))))))).--------------)))))))) ( -24.50) >DroSec_CAF1 10938 113 + 1 ACAAAAGAUAAUCCAGCACGCACGU----AGCCAUGCGAUUGAGGGGCA---UGCGUGCUAUUCAGUUUUGAAAACAUUUUUUAGAUAUUUUUGAAAAGCUGUUAAAAUUUUGAAGAUUG ........(((((.((((((((...----.(((...(....)...))).---)))))))).(((((..((...(((((((((((((....))))))))).))))..))..)))))))))) ( -28.30) >DroSim_CAF1 16975 106 + 1 CCAAAAGAUAAUCCAGCACGCACGU----AGCCAUGCGAUUGAGGGGCAAUAGGCGUGCUAUUCAGUUUUGAAAACAUUUUUUAGAAAUUUUUGAAAAGCA----------AGAAGAUUG ........(((((.(((((((..((----.(((...(....)...))).))..))))))).....(((((..(((.(((((...))))).)))..))))).----------....))))) ( -23.60) >DroEre_CAF1 10448 110 + 1 -----AGAUAAUCCAGCACGCACGU----ACCCAUGCGAUUGGGGGCAAAUAGGCGUGCUGGCAAGUUUUGAAAAAA-AUCUUGGAUAUUUUUGAGUAGUUUUCCAACGCAUGAUGAUUG -----.......(((((((((..(.----.((((......))))..)......)))))))))((.((.(((.((((.-..((..((....))..))...)))).))).)).))....... ( -33.20) >consensus CCAAAAGAUAAUCCAGCACGCACGU____ACCCAUGCGAUUGAGGGGCAAUAGGCGUGCUAUUCAGUUUUGAAAAAAUAUUUUAGAUAUUUUUGAAAAGCU__________UGAAGAUUG ........(((((((((((((.........(((..........))).......))))))))..................(((((((....)))))))..................))))) (-15.99 = -16.49 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:24 2006