Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 979,860 – 979,969 |
Length | 109 |
Max. P | 0.811094 |
Location | 979,860 – 979,969 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 90.42 |
Mean single sequence MFE | -38.74 |
Consensus MFE | -31.40 |
Energy contribution | -32.14 |
Covariance contribution | 0.74 |
Combinations/Pair | 1.03 |
Mean z-score | -1.64 |
Structure conservation index | 0.81 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811094 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 979860 109 + 22224390 GGCCAAGUUAGAACGGUUCCAGUGGGCUUUCCACGAGUGGGCAGCCAGUCAAUCAGCUUCAGGUUUUCUCCGCAAGCUUAGGGA----GCCCACAAUGAGAACCAGUUCGCAG ..........((((((((((((((((((..(...((.(((....))).))....(((((..((......))..)))))..)..)----))))))..)).))))).)))).... ( -41.20) >DroSec_CAF1 62770 94 + 1 GGCCAAGUUAGAACGGUUCCAGU---------------GGGCAGCCAGUCAAUCAGCUUCAGGUUUACUCCGCAAGCUUAGGGA----GCCCACAAUGAGAACCAGUUCGCAG ..........(((((((((((((---------------((((..((.(.....)(((((..((......))..)))))..))..----))))))..)).))))).)))).... ( -30.60) >DroSim_CAF1 41910 109 + 1 GGCCAAGUUAGAACGGUUCCAGUGGGCUUUCCACGAGUGGGCAGCCAGUCAAUCAGCUUCAGGUUUUCCCCGCAAGCUUAGGGA----GCCCACAAUGAGAACCAGUUCGCAG ..........((((((((((((((((((..(...((.(((....))).))....((((((.((.....)).).)))))..)..)----))))))..)).))))).)))).... ( -40.70) >DroEre_CAF1 76076 109 + 1 GGCCACGUUAGAACGGUUCCAGUGGGCUUUCCACGAGUGGGCAGCUAGUCAAUCAGCUUCAGGUUUUCUCCGCAAGCUUAGGGA----GCCCACAAUGAGAACCAGUUCGCAG ..........((((((((((((((((((..(...((((..((((((........))))...((......))))..)))).)..)----))))))..)).))))).)))).... ( -39.80) >DroYak_CAF1 68195 113 + 1 GGCCAAGUUAGAACGGUUCCAGUGGGCUUUCCACGAGUGGGCAGCUAGUCAAUCAGCUUCAGGUUUUCUCCGCCAGCUUAGGGAGUGAGUCCACGAUGAGAACCAGUUCGCAG ..........((((((((((((((((((((((..((((.(((((((........))))...((......))))).))))..)))..))))))))..)).))))).)))).... ( -41.40) >consensus GGCCAAGUUAGAACGGUUCCAGUGGGCUUUCCACGAGUGGGCAGCCAGUCAAUCAGCUUCAGGUUUUCUCCGCAAGCUUAGGGA____GCCCACAAUGAGAACCAGUUCGCAG ..........(((((((((((((((.....))))..((((((......((..(.((((...((......))...)))).)..))....))))))..)).))))).)))).... (-31.40 = -32.14 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:12 2006