Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,099,350 – 8,099,445 |
Length | 95 |
Max. P | 0.650930 |
Location | 8,099,350 – 8,099,445 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 81.16 |
Mean single sequence MFE | -21.12 |
Consensus MFE | -18.42 |
Energy contribution | -19.02 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.46 |
Structure conservation index | 0.87 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8099350 95 + 22224390 ---UCAUUUCGGUUUU--UUUGGUUUUCGUUGGCUUAUUUUUGGUCACUCGGCUUAAACGGCUUUCCAAUCGCUGUCAUAAUUGGAAAUCGUUGAGCUGC ---.............--............(((((.......)))))..((((((((.(((.((((((((..........))))))))))))))))))). ( -21.20) >DroSec_CAF1 5152 74 + 1 ---UCU-----------------------UUGGCUUAUUUUUGGUCACUCGGCUUAAACGGCUUUCCAAUCGCUGUCAUAAUUGGAAAUCGUUGAGCUGC ---...-----------------------.(((((.......)))))..((((((((.(((.((((((((..........))))))))))))))))))). ( -21.20) >DroSim_CAF1 9772 74 + 1 ---UCU-----------------------UUGGCUUAUUUUUGGUCACUCGGCUUAAACGGCUUUCCAAUCGCUGUCAUAAUUGGAAAUCGUUGAGCUGC ---...-----------------------.(((((.......)))))..((((((((.(((.((((((((..........))))))))))))))))))). ( -21.20) >DroEre_CAF1 5382 94 + 1 UGGUCAUUUCGUUU------UAGUUUUCUUUGGCUCAUUUUUGGUCACUCGGCUUAAACGGCUUUCCAAUCGCUGUCAUAAUUGGAAAUCGCUGAGCAGC ((.(((...(((((------.((((.....((((.((....))))))...)))).)))))((((((((((..........))))))))..))))).)).. ( -19.70) >DroYak_CAF1 8646 100 + 1 UGGUCAUUUCGGUUUUAGCUUAGUUUUCUUUGGCUUAUUUUUGGUCACUCGGCUUAAACGGCUUUCCAAUCGCUGUCAUAAUUGGAAAUCGUUGAGCAGC ((..((....(((...((((.((....))..)))).)))..))..))....((((((.(((.((((((((..........)))))))))))))))))... ( -22.30) >consensus ___UCAUUUCG_UU______U_GUUUUC_UUGGCUUAUUUUUGGUCACUCGGCUUAAACGGCUUUCCAAUCGCUGUCAUAAUUGGAAAUCGUUGAGCUGC ..............................(((((.......)))))..((((((((.(((.((((((((..........))))))))))))))))))). (-18.42 = -19.02 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:20 2006