Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,097,983 – 8,098,092 |
Length | 109 |
Max. P | 0.922738 |
Location | 8,097,983 – 8,098,092 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 80.19 |
Mean single sequence MFE | -32.05 |
Consensus MFE | -18.98 |
Energy contribution | -18.85 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.11 |
Mean z-score | -2.40 |
Structure conservation index | 0.59 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922738 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8097983 109 + 22224390 CCCAAAUCGCGCAUUUCCAGCAUACGGAGUGCAUCACUUGGCGAUAUAUUCGAAAGAAAGAAAGGUGCGCGCAUGCGCAUAUGGAAAGCGGCAAAAGCGGCAAAAGCGG- .........(((.((((((((((.(.(((((...))))).).......(((....)))......))))(((....)))...))))))((.((....)).))....))).- ( -33.60) >DroSec_CAF1 3845 95 + 1 -CCAAAUCGCAAA--UCCCGCAUACGGAGUGCAUCACUUGGCGAU--AUCCGAAAGAAAGAAAGGUGCGCGCAUGCGCAUAUGGAAAGCGGG---------AAAAGCGG- -......(((...--((((((...((((.(((........)))..--.))))............((((((....)))))).......)))))---------)...))).- ( -33.80) >DroSim_CAF1 8446 96 + 1 ACCAAAUCGCAAA--UCCCGCAUACGGAGUGCAUCACUUGGCGAU--AUCCGAAAGAAAGAAAGGUGCGCGCAUGCGCAUAUGGAAAGCGGG---------AAAAGCGG- .......(((...--((((((...((((.(((........)))..--.))))............((((((....)))))).......)))))---------)...))).- ( -33.80) >DroEre_CAF1 3756 85 + 1 -----AGCUCGCAUAUCC-----GUGGAGUGCAUCACCUGGCGAU--AUCCGAAA----GAAAGGUGCGCGCAUGCGCAUGUGGAAAGCGGG---------AAAAGCGGG -----..(((((...(((-----(((((.(((........)))..--.)))....----...(.((((((....)))))).).....)))))---------....))))) ( -27.00) >consensus _CCAAAUCGCAAA__UCCCGCAUACGGAGUGCAUCACUUGGCGAU__AUCCGAAAGAAAGAAAGGUGCGCGCAUGCGCAUAUGGAAAGCGGG_________AAAAGCGG_ .......(((.....(((......((((.(((........))).....))))............((((((....))))))..)))..))).................... (-18.98 = -18.85 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:19 2006