Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,090,692 – 8,090,792 |
Length | 100 |
Max. P | 0.936517 |
Location | 8,090,692 – 8,090,792 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 92.57 |
Mean single sequence MFE | -37.50 |
Consensus MFE | -31.99 |
Energy contribution | -31.92 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.10 |
Mean z-score | -2.22 |
Structure conservation index | 0.85 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.936517 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8090692 100 - 22224390 GUCGAGCUCCUUGGCUUCAGUUGCCAGGUAGCGAUAGUGCUGCCGAAUGCCACACAUGCCACUGGGUCAGUGGGAGUUCGAAUCAAAGUGGAGCAAUCAU .(((((((((((((((.((((.((..(((((((....)))))))..(((.....))))).)))))))))..)))))))))).........((....)).. ( -38.30) >DroSec_CAF1 4588 98 - 1 GUCGAGCUCCUUGGCUUCAGAUGCCAGGUAGCGAUAGGGCUGCCGAAUGGC--ACAUGCCACUGGGUCAGUGGGAGUUCGAAUCAAAGUGGAGCAAUCAU .(((((((((((((((.(((......((((((......))))))...((((--....))))))))))))..)))))))))).........((....)).. ( -40.80) >DroEre_CAF1 4056 96 - 1 GUCGAGCUCCUUGGCUUCAGAUGCCAGGUAGCGAUAGUGCUGCCGAAUGCC--ACAUGCCGCUGGGUCGG--AGAGCUCGAAUCAAAGUGGAGCAAUCAU .((((((((..(((((.(((..((..(((((((....)))))))..(((..--.)))))..)))))))).--.)))))))).........((....)).. ( -34.60) >DroYak_CAF1 4040 96 - 1 GUCGAGCUCCUUGGCUUCAGAUGCCAGGUAGCGAUAGUGGUGCCAAAUGCC--ACAUGCCACUGGGUCAG--GGAGUUCGAAUCAAAGUGGGGCAAUCAU .(((((((((((((((.(((.(((......)))...(((((.......)))--))......)))))))))--)))))))))......((((.....)))) ( -36.30) >consensus GUCGAGCUCCUUGGCUUCAGAUGCCAGGUAGCGAUAGUGCUGCCGAAUGCC__ACAUGCCACUGGGUCAG__GGAGUUCGAAUCAAAGUGGAGCAAUCAU .(((((((((((((((.(((..((..((((((......))))))..(((.....)))))..)))))))))..))))))))).........((....)).. (-31.99 = -31.92 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:13 2006