Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,084,007 – 8,084,127 |
Length | 120 |
Max. P | 0.963065 |
Location | 8,084,007 – 8,084,127 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.96 |
Mean single sequence MFE | -32.33 |
Consensus MFE | -26.84 |
Energy contribution | -26.73 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -2.77 |
Structure conservation index | 0.83 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8084007 120 + 22224390 UUGUUGUUCGAUUAAUCGAUUUCGGGAAUGCCACAGAGGAAAUGGUGAUGCUGAAAUCAGUGAUUUCAAAAACCAUAUUGCUUCUUGUGGCACUUCCGUUUUCCUCUUUUUUUUUACCAC .......((((....))))...(((((.(((((((((((..(((((.....(((((((...)))))))...)))))....)))).))))))).)))))...................... ( -34.90) >DroSec_CAF1 969 119 + 1 UUGUUGUUCGAUUAACCGAUUUCGGGAAUGCCACAGAGGAAUUGGUGAUCCUGAGAUCAGUGAUUUCUAAAACCCAAUUGCUUCUUGUGGCACUUCCGUUUUCCUU-UUUUUUUUACCAC ..((((......)))).((...(((((.(((((((((((((((((.(.....((((((...)))))).....))))))).)))).))))))).)))))...))...-............. ( -34.90) >DroEre_CAF1 963 110 + 1 UUGCUGUUCGAUGAACCGAUUUCGGGAAUGCCACAGAGGA-CUGGUAA--CUGAAAUCAGUGAUUUUUA-AACCCAAGUGCUUCUUGUGUCAUUUCCGCUCU---U---UUUUUUACCAC ..((...(((......)))....(((((((.(((((((((-((((...--..((((((...))))))..-...)).))).)))).)))).)))))))))...---.---........... ( -27.20) >consensus UUGUUGUUCGAUUAACCGAUUUCGGGAAUGCCACAGAGGAAAUGGUGAU_CUGAAAUCAGUGAUUUCUAAAACCCAAUUGCUUCUUGUGGCACUUCCGUUUUCCUU_UUUUUUUUACCAC .......(((......)))...(((((.(((((((((((....(((......((((((...))))))....)))......)))).))))))).)))))...................... (-26.84 = -26.73 + -0.11)
Location | 8,084,007 – 8,084,127 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.96 |
Mean single sequence MFE | -28.57 |
Consensus MFE | -23.79 |
Energy contribution | -25.35 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.11 |
Mean z-score | -2.18 |
Structure conservation index | 0.83 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874821 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8084007 120 - 22224390 GUGGUAAAAAAAAAGAGGAAAACGGAAGUGCCACAAGAAGCAAUAUGGUUUUUGAAAUCACUGAUUUCAGCAUCACCAUUUCCUCUGUGGCAUUCCCGAAAUCGAUUAAUCGAACAACAA ((.((.................(((.(((((((((.((.(....(((((..((((((((...))))))))....)))))..).))))))))))).)))...((((....)))))).)).. ( -32.40) >DroSec_CAF1 969 119 - 1 GUGGUAAAAAAAA-AAGGAAAACGGAAGUGCCACAAGAAGCAAUUGGGUUUUAGAAAUCACUGAUCUCAGGAUCACCAAUUCCUCUGUGGCAUUCCCGAAAUCGGUUAAUCGAACAACAA ((.((........-........(((.(((((((((.((.(.((((((......(....)..(((((....)))))))))))).))))))))))).)))...((((....)))))).)).. ( -32.30) >DroEre_CAF1 963 110 - 1 GUGGUAAAAAA---A---AGAGCGGAAAUGACACAAGAAGCACUUGGGUU-UAAAAAUCACUGAUUUCAG--UUACCAG-UCCUCUGUGGCAUUCCCGAAAUCGGUUCAUCGAACAGCAA ...((......---.---.((.(((.((((.((((.((.(.(((.((...-........((((....)))--)..))))-)).)))))).)))).)))...)).((((...)))).)).. ( -21.02) >consensus GUGGUAAAAAAAA_AAGGAAAACGGAAGUGCCACAAGAAGCAAUUGGGUUUUAGAAAUCACUGAUUUCAG_AUCACCAAUUCCUCUGUGGCAUUCCCGAAAUCGGUUAAUCGAACAACAA ((.((.................(((.(((((((((.((.(.((((((......((((((...)))))).......))))))).))))))))))).)))...((((....)))))).)).. (-23.79 = -25.35 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:12 2006