Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,083,622 – 8,083,718 |
Length | 96 |
Max. P | 0.572623 |
Location | 8,083,622 – 8,083,718 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 76.87 |
Mean single sequence MFE | -30.99 |
Consensus MFE | -20.88 |
Energy contribution | -21.74 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.05 |
Mean z-score | -1.11 |
Structure conservation index | 0.67 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8083622 96 + 22224390 GAACGCGAGCCCCAAUGGGUGCCCGCCCAGUGGGUGCACAACAAUCGCGACGAGUCAUAAUGGGUUCUAAAGCACCCGC--------------AACCACCA-CACUACCAU ...(((((((((((.(((((....))))).)))).)).......)))))............((((.(....).))))..--------------........-......... ( -29.31) >DroSec_CAF1 586 96 + 1 GAGCGCGAGCCCCAAUGGGUGCCCGCCCAGUGGGUGCACAACAAUCGCGACGAGUCAUAAUGGGGUCUACAGCACCCCC--------------AACCAACA-CACUACCAC ..((((((((((((.(((((....))))).)))).)).......))))).)..........((((((....).))))).--------------........-......... ( -31.31) >DroEre_CAF1 585 96 + 1 GAGCGCGAGCCCCAAUGGGUGCCCGCCCAGUGGGUGCACAACAAUCGCGACGAGUCAUAAUGGGGUCAUCAGCACCCCC--------------UACCACUA-CACUACCAC ..((((((((((((.(((((....))))).)))).)).......))))).).(((......((((((....).))))).--------------....))).-......... ( -31.41) >DroYak_CAF1 593 111 + 1 GAGCGCGAGCCCCAAUGGGUGCCCGCCCAGUGGGUGCACAACAAUCGCGACGAGUCAUAAUGGGGUCUUCAGCACCCCCUCCUCCCACUGCACUACCACUACCACUACCAC ..((((((((((((.(((((....))))).)))).)).......))))((.(((.......((((((....).)))))))).)).....)).................... ( -33.32) >DroMoj_CAF1 980 90 + 1 GAGCGCGAGCCCCAAUGGGUGCCCGCGCAGUGGGUGCACAACAAUCGCGACGAAUCAUAAUGUCUUCAUCGGCGACUG--------------------CUG-CCCCAACUC ..(((((.(((((...))).)).)))))..((((.(((...((.((((((.(((..........))).)).)))).))--------------------.))-))))).... ( -33.40) >DroPer_CAF1 814 81 + 1 GAGCGCGAGCCGCAGUGGGUGCCCGCCCAGUGGGUGCACAACAAUCGGGACGAGUCAUAG-GGAUUCACUGGAACCCGG--------------CCC--------------- ..(.((..(((.((.(((((....))))).))))))).).......(((..(((((....-.))))).((((...))))--------------)))--------------- ( -27.20) >consensus GAGCGCGAGCCCCAAUGGGUGCCCGCCCAGUGGGUGCACAACAAUCGCGACGAGUCAUAAUGGGGUCAUCAGCACCCCC______________AACCACUA_CACUACCAC ...(((((((((((.(((((....))))).)))).)).......)))))............(((..........))).................................. (-20.88 = -21.74 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:10 2006