Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,066,890 – 8,066,990 |
Length | 100 |
Max. P | 0.886202 |
Location | 8,066,890 – 8,066,990 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 88.21 |
Mean single sequence MFE | -28.70 |
Consensus MFE | -22.76 |
Energy contribution | -22.88 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.92 |
Structure conservation index | 0.79 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886202 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8066890 100 + 22224390 GCGUCCCUAAUCGAACAUCUGCCAAAAGGGAGGAAACUUCAGAUAAAAGCU--CCUCAGAGGUCGACAGAUUGAUGAGGCGGAUAAAAAUAGAAAUGGG---GGC ..(((((((.((....(((((((.....((((....))))...........--..(((..((((....))))..)))))))))).......))..))))---))) ( -31.50) >DroSec_CAF1 48841 102 + 1 GCGUUCCUAAUCGAACAUCUGCCAG-AGGGAGGAAACUUCAGAUAAAAGCU--CCUCGGAGGUCGACAGAUUGAUGAGGCGGAUAAAAAUAGGAAUGGGCUGACC .((((((((.......(((((((..-..((((....))))...........--..(((..((((....))))..)))))))))).....))))))))........ ( -31.20) >DroSim_CAF1 24569 104 + 1 GCGUUCCUAAUCGAACAUCUGUCAA-AGGGAGGAAACUUCAGAUUAAAGCUCUCCUUAGAGGUCGACAGAUUAAUGAGGCGGAUAAAAAUAGGAAUGGGCUGACC .((((((((.(((...(((((((..-..((((....)))).........((((....))))...)))))))...)))............))))))))........ ( -27.22) >DroEre_CAF1 36490 96 + 1 GCGUCCCUAAUCGAACAUCUGCCAA-AGGGAG--AACUGCUGCCAAAGGCU--CCUCAGAGGUCGACAGAUUGAUGAGGCGGAUAAAAAUAGCAAUGGACU---- ..((((...........(((.((..-.)).))--)..(((((((...))).--(((((..((((....))))..)))))...........))))..)))).---- ( -26.10) >DroYak_CAF1 43017 98 + 1 GCGUCCCUAAUCGAACAUCUGCCGA-AGGGAGGAAACUUCAGAUAAAAGCU--CCUCAGAGGUCGACAGAUUGAUGAGGCGGAUAAAAAUAGGAAUGGGCU---- .(((.((((.......(((((((..-..((((....))))...........--..(((..((((....))))..)))))))))).....)))).)))....---- ( -27.50) >consensus GCGUCCCUAAUCGAACAUCUGCCAA_AGGGAGGAAACUUCAGAUAAAAGCU__CCUCAGAGGUCGACAGAUUGAUGAGGCGGAUAAAAAUAGGAAUGGGCU___C .(((.((((.......(((((((.....((((....))))...............(((..((((....))))..)))))))))).....)))).)))........ (-22.76 = -22.88 + 0.12)
Location | 8,066,890 – 8,066,990 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 88.21 |
Mean single sequence MFE | -24.64 |
Consensus MFE | -20.64 |
Energy contribution | -21.16 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.12 |
Mean z-score | -1.40 |
Structure conservation index | 0.84 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579093 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8066890 100 - 22224390 GCC---CCCAUUUCUAUUUUUAUCCGCCUCAUCAAUCUGUCGACCUCUGAGG--AGCUUUUAUCUGAAGUUUCCUCCCUUUUGGCAGAUGUUCGAUUAGGGACGC ...---....................(((.(((.(((((((((.....((((--((((((.....)))).))))))....)))))))))....))).)))..... ( -25.60) >DroSec_CAF1 48841 102 - 1 GGUCAGCCCAUUCCUAUUUUUAUCCGCCUCAUCAAUCUGUCGACCUCCGAGG--AGCUUUUAUCUGAAGUUUCCUCCCU-CUGGCAGAUGUUCGAUUAGGAACGC ((....))..................(((.(((.((((((((......((((--((((((.....)))).))))))...-.))))))))....))).)))..... ( -24.20) >DroSim_CAF1 24569 104 - 1 GGUCAGCCCAUUCCUAUUUUUAUCCGCCUCAUUAAUCUGUCGACCUCUAAGGAGAGCUUUAAUCUGAAGUUUCCUCCCU-UUGACAGAUGUUCGAUUAGGAACGC ((....))..............(((...((....(((((((((......((((((.((((.....))))))))))....-)))))))))....))...))).... ( -23.30) >DroEre_CAF1 36490 96 - 1 ----AGUCCAUUGCUAUUUUUAUCCGCCUCAUCAAUCUGUCGACCUCUGAGG--AGCCUUUGGCAGCAGUU--CUCCCU-UUGGCAGAUGUUCGAUUAGGGACGC ----.((((((((((...........(((((....((....))....)))))--.(((...)))))))))(--((((..-..)).)))...........)))).. ( -22.80) >DroYak_CAF1 43017 98 - 1 ----AGCCCAUUCCUAUUUUUAUCCGCCUCAUCAAUCUGUCGACCUCUGAGG--AGCUUUUAUCUGAAGUUUCCUCCCU-UCGGCAGAUGUUCGAUUAGGGACGC ----......................(((.(((.(((((((((.....((((--((((((.....)))).))))))...-)))))))))....))).)))..... ( -27.30) >consensus G___AGCCCAUUCCUAUUUUUAUCCGCCUCAUCAAUCUGUCGACCUCUGAGG__AGCUUUUAUCUGAAGUUUCCUCCCU_UUGGCAGAUGUUCGAUUAGGGACGC ..........................(((.(((.(((((((((.....((((...(((((.....)))))..))))....)))))))))....))).)))..... (-20.64 = -21.16 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:06 2006