Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 978,418 – 978,518 |
Length | 100 |
Max. P | 0.999886 |
Location | 978,418 – 978,518 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 96.28 |
Mean single sequence MFE | -27.12 |
Consensus MFE | -25.66 |
Energy contribution | -25.90 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -2.61 |
Structure conservation index | 0.95 |
SVM decision value | 4.38 |
SVM RNA-class probability | 0.999886 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 978418 100 - 22224390 UUUCAGUCGGUUUAUUUUGGUGCCAUGAU---AUGGUAUCGAAUGCUUUAUAACAAUUGGAUCCAUAAGAUGAUAAUGAGUUCAAUUGCACGAAAUGGACUAC ....((((.((((..(((((((((((...---)))))))))))..........((((((((..(((.........)))..))))))))....)))).)))).. ( -26.70) >DroSec_CAF1 61318 103 - 1 UUUCAGUCGGUUUAUUUUGGUGCCAUGAUAUUAUGGUAUCGAAUGCUUUAUAACAAUUGGAUCCAUAAGAUGGUAAUGAGUUCAAUUGCACGAAAUGGACUAC ....((((.((((..((((((((((((....))))))))))))..........((((((((..(((.........)))..))))))))....)))).)))).. ( -28.60) >DroSim_CAF1 40465 103 - 1 UUUCAGUCGGUUUAUUUUGGUGCCAUGAUAUUAUGGUAUCGAAUGCUUUAUAACAAUUGGAUCCAUAAGAUGAUAAUGAGUUCAAUUGCACGAAAUGGACUAC ....((((.((((..((((((((((((....))))))))))))..........((((((((..(((.........)))..))))))))....)))).)))).. ( -28.60) >DroEre_CAF1 74612 100 - 1 UUUCAGUCGGUUUAUUUUGGUGCCAUGAU---AUGGUAUCGAAUGCUUUAUAACAAUUGGAUCCAUAAGAUGAUAAUGAGUUCAAUUGCACGAAAUGAGCUAC ........((((((((((((((((((...---)))))))).............((((((((..(((.........)))..))))))))...)))))))))).. ( -25.20) >DroYak_CAF1 66776 100 - 1 UUUCAGUCGGUUUAUUUUGGUGCCAUGAU---AUGGUAUCGAAUGCUAUAUAACAAUUCGAUCCAUAAGAUGAUAAUGAGUUCAAUUGCACGAAAUGGACUAC ........(((((((((((.((((((..(---((((.(((((((...........))))))))))))..)))....((....))...)))))))))))))).. ( -26.50) >consensus UUUCAGUCGGUUUAUUUUGGUGCCAUGAU___AUGGUAUCGAAUGCUUUAUAACAAUUGGAUCCAUAAGAUGAUAAUGAGUUCAAUUGCACGAAAUGGACUAC ....((((.((((..(((((((((((......)))))))))))..........((((((((..(((.........)))..))))))))....)))).)))).. (-25.66 = -25.90 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:11 2006