Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,063,734 – 8,063,831 |
Length | 97 |
Max. P | 0.939383 |
Location | 8,063,734 – 8,063,831 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 78.72 |
Mean single sequence MFE | -25.61 |
Consensus MFE | -12.92 |
Energy contribution | -15.24 |
Covariance contribution | 2.32 |
Combinations/Pair | 1.10 |
Mean z-score | -2.36 |
Structure conservation index | 0.50 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8063734 97 + 22224390 CCAACCAUACACCCCA--C-------CCCCCUCAAGUGCAUGCAAUCAGGACGCUCUCACCUCUUUCGCCACUUGGAAUUUCCAUGGCUUCUUGGUGAGAGGG--GGA ...........((((.--.-------...(((....((....))...)))...((((((((......((((..(((.....))))))).....))))))))))--)). ( -33.90) >DroSec_CAF1 45676 101 + 1 CCACCCAUACCCCACAUGC-------CCCCCUCAAGUGCACGCAAUCAGGACGCUCUCACCUCUUUCGCCACUUGGAAUUUCCAUGGCUUCUUGGUGAGAGGGAUGGC ....((((.(((.....((-------...(((....((....))...)))..))(((((((......((((..(((.....))))))).....)))))))))))))). ( -31.80) >DroSim_CAF1 21398 103 + 1 CCACCCAAACCCCACACACCC-----CCCCCUCAAGUGCACGCAAUCAGGACGCUCUCACCUCUUUCGCCACUUGGAAUUUCCAUGGCUUCUUGGUGAGAGGGUUGGU ....((((.(((.........-----...(((....((....))...)))....(((((((......((((..(((.....))))))).....)))))))))))))). ( -30.70) >DroEre_CAF1 33592 81 + 1 CCUCCCACAC---------C-------CCCUUCAAGUGCACGCAAUCAGGACUCUCUCACCUCUUUCGCCACUUGGAAUUUUCAUGGCUUCUCGAGG----------- (((((((...---------.-------...((((((((..((.((..(((.........)))..)))).)))))))).......)))......))))----------- ( -14.84) >DroYak_CAF1 39700 97 + 1 CCGCCCACACCUCUCACACCCCCUUUCCCCGUCAAGUGCACGCAAUCAGGACUCUCUCACCUCUUUCGCCACUUGGAAUUUCCAUGGCUUCUCGAGG----------- .........((((.................(((...((....)).....)))...............((((..(((.....))))))).....))))----------- ( -16.80) >consensus CCACCCACACCCCACA__CC______CCCCCUCAAGUGCACGCAAUCAGGACGCUCUCACCUCUUUCGCCACUUGGAAUUUCCAUGGCUUCUUGGUGAGAGGG__GG_ .............................(((....((....))...)))...((((((((......((((..(((.....))))))).....))))))))....... (-12.92 = -15.24 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:02 2006