Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,060,591 – 8,060,682 |
Length | 91 |
Max. P | 0.966657 |
Location | 8,060,591 – 8,060,682 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 86.13 |
Mean single sequence MFE | -29.48 |
Consensus MFE | -21.03 |
Energy contribution | -21.59 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.13 |
Mean z-score | -2.85 |
Structure conservation index | 0.71 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966657 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8060591 91 + 22224390 UGU-GUGUGCGUGCCGAAGAGUAAGAGUACGAGUUAUUUUU---------GUACCUGCUCUAUAGCAGCUCUUCCUCUUCUUCAGGAGGGUUCACUUACAA (((-(.(((...((((((((((.((.(((((((.....)))---------))))))(((....))).)))))))((((......))))))).))).)))). ( -30.00) >DroSec_CAF1 42576 92 + 1 UGUGGUGUGUGUGCCGAAGAGUAAGAGUACGAGUUAUUUUU---------GUACCUGCUCUAUAGCAGCUCUUCCUCUUCUUGAGGAAGGUUCACUUACAA (((((.(((..(((...((((((.(.(((((((.....)))---------)))))))))))...)))((.(((((((.....))))))))).)))))))). ( -32.00) >DroSim_CAF1 18315 84 + 1 --------GUGUGCCGAAGAGUAAGAGUACGAGUUAUUUUU---------GUACCUGCUCUAUAGCAGCUCUUCCUCUUCUUCAGGAGGGUUCACUUACAA --------(((.((((((((((.((.(((((((.....)))---------))))))(((....))).)))))))((((......))))))).)))...... ( -28.30) >DroEre_CAF1 30492 99 + 1 -UU-GUGUGUGUGCCGAGAAGUAAGAGUACGAGUUCUUUUUGUGCCUUUUGUACCUGCUCUAUAGCUACUCUUCCUCUUCUUCGGGAGGGUUUACUUACAA -.(-(((.(((.(((((..((((((.(((((((.....))))))))).........(((....)))))))..))..((((....))))))).))).)))). ( -25.70) >DroYak_CAF1 36421 98 + 1 --U-GUGUGUGUGCCGAAGAGUAAGAGUACGAGUUAUUUUUGUACCUUUUGUACCUGCUCUAUAGCUGCUCUUCCUCUUCUUCAGGAGGGUUCACUUACAA --(-(((.(((.(((((((((((((.(((((((.....))))))))).........(((....)))))))))))((((......))))))).))).)))). ( -31.40) >consensus __U_GUGUGUGUGCCGAAGAGUAAGAGUACGAGUUAUUUUU_________GUACCUGCUCUAUAGCAGCUCUUCCUCUUCUUCAGGAGGGUUCACUUACAA ....(((.(((.((((((((((.((.((((....................))))))(((....))).)))))))(((((....)))))))).))).))).. (-21.03 = -21.59 + 0.56)
Location | 8,060,591 – 8,060,682 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 86.13 |
Mean single sequence MFE | -22.10 |
Consensus MFE | -16.09 |
Energy contribution | -16.25 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.17 |
Mean z-score | -1.89 |
Structure conservation index | 0.73 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.733847 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8060591 91 - 22224390 UUGUAAGUGAACCCUCCUGAAGAAGAGGAAGAGCUGCUAUAGAGCAGGUAC---------AAAAAUAACUCGUACUCUUACUCUUCGGCACGCACAC-ACA ......(((...((((........))))....((((((..((((..(((((---------...........)))))....))))..)))).)).)))-... ( -22.70) >DroSec_CAF1 42576 92 - 1 UUGUAAGUGAACCUUCCUCAAGAAGAGGAAGAGCUGCUAUAGAGCAGGUAC---------AAAAAUAACUCGUACUCUUACUCUUCGGCACACACACCACA ......(((...(((((((.....))))))).(.((((..((((..(((((---------...........)))))....))))..))))).)))...... ( -25.30) >DroSim_CAF1 18315 84 - 1 UUGUAAGUGAACCCUCCUGAAGAAGAGGAAGAGCUGCUAUAGAGCAGGUAC---------AAAAAUAACUCGUACUCUUACUCUUCGGCACAC-------- ......(((..(((....)..((((((.((((.(((((....)))))((((---------...........)))))))).)))))))))))..-------- ( -20.90) >DroEre_CAF1 30492 99 - 1 UUGUAAGUAAACCCUCCCGAAGAAGAGGAAGAGUAGCUAUAGAGCAGGUACAAAAGGCACAAAAAGAACUCGUACUCUUACUUCUCGGCACACACAC-AA- ................((((.((((...((((((((((....)))..((.......))..............))))))).)))))))).........-..- ( -18.40) >DroYak_CAF1 36421 98 - 1 UUGUAAGUGAACCCUCCUGAAGAAGAGGAAGAGCAGCUAUAGAGCAGGUACAAAAGGUACAAAAAUAACUCGUACUCUUACUCUUCGGCACACACAC-A-- ......(((.......(((((((((((...(((..(((....)))..((((.....))))........)))...))))...)))))))......)))-.-- ( -23.22) >consensus UUGUAAGUGAACCCUCCUGAAGAAGAGGAAGAGCUGCUAUAGAGCAGGUAC_________AAAAAUAACUCGUACUCUUACUCUUCGGCACACACAC_A__ ......(((..(((((........)))(((((((((((....)))))((((....................)))).....))))))))..)))........ (-16.09 = -16.25 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:00 2006