Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,058,344 – 8,058,442 |
Length | 98 |
Max. P | 0.890781 |
Location | 8,058,344 – 8,058,442 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 89.57 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -18.37 |
Energy contribution | -18.77 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.10 |
Mean z-score | -2.04 |
Structure conservation index | 0.70 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593177 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8058344 98 + 22224390 AAAAAAUUCACGGCACGCGCAUGCGCAGCAUUUUUUCUACUGCUGUCCGCAUGUUGUUCUUUUCGUUCGAGUUUGCU----------GUACUGUUCUGUGCCUUUUCA ...........(((((..((((((((((((..........)))))..))))))).((....(((....)))...)).----------..........)))))...... ( -24.20) >DroSec_CAF1 40318 98 + 1 AAAAAAUUCUCGGCACGCGCAUGCGCAGCAUUUUUUCUACUGCUGUCCGCAUGUUGUUCUUUUCGUUCGAGUUUGCU----------GUACUGUUCUGUGCCUUUUCA ...........(((((..((((((((((((..........)))))..))))))).((....(((....)))...)).----------..........)))))...... ( -24.20) >DroSim_CAF1 15990 98 + 1 AAAAAAUUCUCGGCACGCGCAUGCGCAGCAUUUUUUCUACUGCUGUCCGCAUGUUGUUCUUUUCGUUCGAGUUUGCU----------GUACUGUUCUGUGCCUUUUCA ...........(((((..((((((((((((..........)))))..))))))).((....(((....)))...)).----------..........)))))...... ( -24.20) >DroEre_CAF1 28187 94 + 1 AAAAAAUUCUCGGCACGCGCAUGCGCAGCAUUUUUUCUACUGCGGUCAGCACGUUGUUCCUUU----CGAGUUUGCU----------GUGCUGUGCUGUGCCUUUUCA ...........((((((((((.((((((((..(((...((.(((.......))).))......----.)))..))))----------))))))))).)))))...... ( -34.40) >DroYak_CAF1 34180 104 + 1 AAAAAAUUCUCGGCACGCGCAUGCGCAGCAUUUUUUCUACUGUUGUCCGCACGUUGUUCUUUU----CGAGUUUGCUAUGCUGUACUGUGCUGUGCUUUGCCUUUUCA ...........((((.(((((.((((((.........(((.((.((..((.((..(....)..----)).))..))...)).))))))))))))))..))))...... ( -24.50) >consensus AAAAAAUUCUCGGCACGCGCAUGCGCAGCAUUUUUUCUACUGCUGUCCGCAUGUUGUUCUUUUCGUUCGAGUUUGCU__________GUACUGUUCUGUGCCUUUUCA ...........(((((..((((((((((((..........))))))..)))))).((............((....))............))......)))))...... (-18.37 = -18.77 + 0.40)
Location | 8,058,344 – 8,058,442 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 89.57 |
Mean single sequence MFE | -25.00 |
Consensus MFE | -19.28 |
Energy contribution | -19.20 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.11 |
Mean z-score | -2.04 |
Structure conservation index | 0.77 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890781 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8058344 98 - 22224390 UGAAAAGGCACAGAACAGUAC----------AGCAAACUCGAACGAAAAGAACAACAUGCGGACAGCAGUAGAAAAAAUGCUGCGCAUGCGCGUGCCGUGAAUUUUUU ......(((((..........----------.......((....)).........((((((..(((((..........)))))))))))...)))))........... ( -23.00) >DroSec_CAF1 40318 98 - 1 UGAAAAGGCACAGAACAGUAC----------AGCAAACUCGAACGAAAAGAACAACAUGCGGACAGCAGUAGAAAAAAUGCUGCGCAUGCGCGUGCCGAGAAUUUUUU ......(((((..........----------.......((....)).........((((((..(((((..........)))))))))))...)))))........... ( -23.00) >DroSim_CAF1 15990 98 - 1 UGAAAAGGCACAGAACAGUAC----------AGCAAACUCGAACGAAAAGAACAACAUGCGGACAGCAGUAGAAAAAAUGCUGCGCAUGCGCGUGCCGAGAAUUUUUU ......(((((..........----------.......((....)).........((((((..(((((..........)))))))))))...)))))........... ( -23.00) >DroEre_CAF1 28187 94 - 1 UGAAAAGGCACAGCACAGCAC----------AGCAAACUCG----AAAGGAACAACGUGCUGACCGCAGUAGAAAAAAUGCUGCGCAUGCGCGUGCCGAGAAUUUUUU ......(((((.(((((((((----------.......((.----...))......))))))..(((((((.......)))))))..)))..)))))........... ( -33.52) >DroYak_CAF1 34180 104 - 1 UGAAAAGGCAAAGCACAGCACAGUACAGCAUAGCAAACUCG----AAAAGAACAACGUGCGGACAACAGUAGAAAAAAUGCUGCGCAUGCGCGUGCCGAGAAUUUUUU ......(((...((...((........))...)).......----.........(((((((.....(((((.......)))))....))))))))))........... ( -22.50) >consensus UGAAAAGGCACAGAACAGUAC__________AGCAAACUCGAACGAAAAGAACAACAUGCGGACAGCAGUAGAAAAAAUGCUGCGCAUGCGCGUGCCGAGAAUUUUUU ......(((((......((.............)).....................(((((.....((((((.......)))))))))))...)))))........... (-19.28 = -19.20 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:58 2006