Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,052,014 – 8,052,118 |
Length | 104 |
Max. P | 0.632970 |
Location | 8,052,014 – 8,052,118 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 92.67 |
Mean single sequence MFE | -19.67 |
Consensus MFE | -17.33 |
Energy contribution | -17.75 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.08 |
Mean z-score | -1.35 |
Structure conservation index | 0.88 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632970 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8052014 104 + 22224390 C-CCAAUGCCGAUCCCCUCGUGCUUCCAGCAAUUUUAAGCGCAUCAAGUGCUUUUGUCAUCAUCGUCAUCACAGUUGAACGCUCCAACAAUUGCUUUCAGCUUUC .-...(((.((((.......(((.....))).....((((((.....))))))........)))).)))...(((((((.((..........)).)))))))... ( -20.30) >DroSec_CAF1 34121 104 + 1 C-CCAAUGCCGAUCCCCUCGUGCUUCCAGCAAUUUUAAGCGCAUCAAGUGCUUUUGUCAUCAUCGUCAUCACAGUUGAACGCUCCAACAAUUGCUUUCAGCUUUC .-...(((.((((.......(((.....))).....((((((.....))))))........)))).)))...(((((((.((..........)).)))))))... ( -20.30) >DroSim_CAF1 9602 104 + 1 C-CCAAUGCCGAUCCCCUCGUGCUUCCAGCAAUUUUAAGCGCAUCAAGUGCUUUUGUCAUCAUCGUCAUCACAGUUGAACGCUCCAACAAUUGCUUUCAGCUUUC .-...(((.((((.......(((.....))).....((((((.....))))))........)))).)))...(((((((.((..........)).)))))))... ( -20.30) >DroEre_CAF1 22110 103 + 1 --CCAAUGCCGAUCCCCUUGUGCUACCAGCAAUUUUAAGCGCAUCAAGUGCUUUUGUCAUCAUCGCCAUCACAGUUGAACGCUCCAACAAUUGCUUUCAGCUUUC --...(((.((((.......(((.....))).....((((((.....))))))........)))).)))...(((((((.((..........)).)))))))... ( -20.30) >DroYak_CAF1 28020 105 + 1 CGCAAAUGCCGAUCCCCUCGUGCUUCCAGCAAUUUUAAGCGCAUCAAGUGCUUUUGUCAUCAUCGUCAUCACAGUUGAACGCUCCAACAAUUGCUUUCAGCUUUC .((....(((((.....))).))....(((((((...((((..((((.((....((.(......).))...)).)))).)))).....)))))))....)).... ( -20.60) >DroAna_CAF1 31868 105 + 1 UGCCACUGCCUCUGCCCCCCCUCUACUAACGAUUUUAAGCGCAUCAAGUGCUUUUGUCAUCAUCGUCAUCACAGUUGAACGCUCCAACAAUUGCUUUUAGCUCGU ..............................(((...((((((.....))))))..)))............(((((((((.((..........)).))))))).)) ( -16.20) >consensus C_CCAAUGCCGAUCCCCUCGUGCUUCCAGCAAUUUUAAGCGCAUCAAGUGCUUUUGUCAUCAUCGUCAUCACAGUUGAACGCUCCAACAAUUGCUUUCAGCUUUC .....(((.((((.......(((.....))).....((((((.....))))))........)))).)))...(((((((.((..........)).)))))))... (-17.33 = -17.75 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:57 2006