Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,040,200 – 8,040,305 |
Length | 105 |
Max. P | 0.819989 |
Location | 8,040,200 – 8,040,305 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 86.51 |
Mean single sequence MFE | -16.12 |
Consensus MFE | -12.58 |
Energy contribution | -13.39 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.05 |
Mean z-score | -1.86 |
Structure conservation index | 0.78 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8040200 105 + 22224390 UACAUAAAGGGGCCAAAAAAAAAAAAGAAAAAAUACACAUUUUAUGGGACCCACAUACCAAAAGGAGCAUUCAUUAUGCACUCAUUAAGUGGAAUUACCAAGACA ........((..(((.((((...................)))).)))...((((...((....)).((((.....)))).........)))).....))...... ( -14.21) >DroSec_CAF1 13779 102 + 1 UACAUAAAGUGG---AAAAAAAAGAAGAAAAUAAACACAUUUUAUGGGGCCCACAUACCAAAAGUAGCAUUCAUUAUGCACUCAUUAAGUGGAAUUCCCAAGACA ..(((((((((.---......................)))))))))(((.((((.(((.....)))((((.....)))).........))))....)))...... ( -20.30) >DroSim_CAF1 3068 105 + 1 UACAUAAAGUGGCAAAAAAAAAAGAAGAAAAUAAACACAUUUUAUGGGACCCACAUACCAAAAGUAGCAUUCAUUAUGCACUCAUUAAGUGGAAUUACCAAGACA ..(((((((((..........................)))))))))....((((.(((.....)))((((.....)))).........))))............. ( -16.57) >DroYak_CAF1 15792 92 + 1 UACAUAAAGUAGCGAAAAAA-------------UACACACUUUAUGGGACCCACAUACCAAAAGCAGCAUUCAUUAUGCACUCAUUAAGUGGAAUUACUUAGACA ..((((((((.(.(......-------------..).)))))))))....................((((.....)))).....(((((((....)))))))... ( -13.40) >consensus UACAUAAAGUGGC_AAAAAAAAAGAAGAAAAUAAACACAUUUUAUGGGACCCACAUACCAAAAGUAGCAUUCAUUAUGCACUCAUUAAGUGGAAUUACCAAGACA ..(((((((((..........................)))))))))....((((.(((.....)))((((.....)))).........))))............. (-12.58 = -13.39 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:54 2006