| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 977,265 – 977,370 |
| Length | 105 |
| Max. P | 0.749798 |
| Location | 977,265 – 977,370 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 88.27 |
| Mean single sequence MFE | -26.56 |
| Consensus MFE | -19.08 |
| Energy contribution | -19.36 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 977265 105 + 22224390 -UAAGCUAAUUACCUUAUCUGCUUUUUGUGCGGCGCUGGAUUUUUCCACAAGGCAAACGAAUGUAGGCACUUACGCAGAUAGGUAACAUAUAGCCAAAAUACCCGA -...((((.((((((.((((((..(((((..(.(..((((....))))...).)..))))).((((....))))))))))))))))....))))............ ( -28.00) >DroSec_CAF1 60250 96 + 1 -UAAGCUAAUUACCUUAUCUGCUUUUUGUGCGGCGCUGGAUUUUUCCACAAGGCAAACGA---------CUUGCGCAGAUAGGUAACAUAUAGCCAAAAUACCCGA -...((((.((((((.((((((..(((((((...)).(((....))))))))((((....---------.))))))))))))))))....))))............ ( -25.40) >DroSim_CAF1 39367 96 + 1 -UAAGCUAAUUACCUUAUCUGCUUUUUGUGCGGCGCUGGAUUUUUCCACAAGGCAAACGA---------CUUGCGCAGAUAGGUAACAUAUAGCCAAAAUACCCGA -...((((.((((((.((((((..(((((((...)).(((....))))))))((((....---------.))))))))))))))))....))))............ ( -25.40) >DroEre_CAF1 73424 101 + 1 UUAAGCUAAUUACCUUAUCUGCUUUUUGUGCGGCGCUGGAUUUUUCCACAAGGCAAACGAAUGUAGGAACUUACGCAGAUAAGU-----AUAGCCAAAAUACCCGA ....((((..(((.((((((((..(((((..(.(..((((....))))...).)..))))).((((....))))))))))))))-----)))))............ ( -25.60) >DroYak_CAF1 65554 100 + 1 -UAGCCUAAUUACCUUAUCUGCUUUUUGUGCGGCACUGGAUUUUUCCACAAGGCAAACGAGUGUCGGAACUUACGCAGAUAAGU-----GUAGCCAAAAUACCCGA -........(((((((((((((......(.(((((((.(..(((.((....)).)))).))))))).)......))))))))).-----))))............. ( -28.40) >consensus _UAAGCUAAUUACCUUAUCUGCUUUUUGUGCGGCGCUGGAUUUUUCCACAAGGCAAACGA_UGU_GG_ACUUACGCAGAUAGGUAACAUAUAGCCAAAAUACCCGA ....((((.....(((((((((..(((((...((..((((....))))....))..))))).............))))))))).......))))............ (-19.08 = -19.36 + 0.28)
| Location | 977,265 – 977,370 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 88.27 |
| Mean single sequence MFE | -26.72 |
| Consensus MFE | -22.04 |
| Energy contribution | -22.80 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.706127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 977265 105 - 22224390 UCGGGUAUUUUGGCUAUAUGUUACCUAUCUGCGUAAGUGCCUACAUUCGUUUGCCUUGUGGAAAAAUCCAGCGCCGCACAAAAAGCAGAUAAGGUAAUUAGCUUA- ...........(((((...(((((((((((((.((((.((..((....))..))))))((((....))))..............)))))).))))))))))))..- ( -28.70) >DroSec_CAF1 60250 96 - 1 UCGGGUAUUUUGGCUAUAUGUUACCUAUCUGCGCAAG---------UCGUUUGCCUUGUGGAAAAAUCCAGCGCCGCACAAAAAGCAGAUAAGGUAAUUAGCUUA- ...........(((((...((((((((((((((((((---------...)))))..(((((............)))))......)))))).))))))))))))..- ( -27.60) >DroSim_CAF1 39367 96 - 1 UCGGGUAUUUUGGCUAUAUGUUACCUAUCUGCGCAAG---------UCGUUUGCCUUGUGGAAAAAUCCAGCGCCGCACAAAAAGCAGAUAAGGUAAUUAGCUUA- ...........(((((...((((((((((((((((((---------...)))))..(((((............)))))......)))))).))))))))))))..- ( -27.60) >DroEre_CAF1 73424 101 - 1 UCGGGUAUUUUGGCUAU-----ACUUAUCUGCGUAAGUUCCUACAUUCGUUUGCCUUGUGGAAAAAUCCAGCGCCGCACAAAAAGCAGAUAAGGUAAUUAGCUUAA ...........(((((.-----.((((((((((((......))).......(((..((((((....)))).))..)))......))))))))).....)))))... ( -25.50) >DroYak_CAF1 65554 100 - 1 UCGGGUAUUUUGGCUAC-----ACUUAUCUGCGUAAGUUCCGACACUCGUUUGCCUUGUGGAAAAAUCCAGUGCCGCACAAAAAGCAGAUAAGGUAAUUAGGCUA- ..........(((((((-----.(((((((((........((.((((.(.((.((....))...)).).)))).))........))))))))))).....)))))- ( -24.19) >consensus UCGGGUAUUUUGGCUAUAUGUUACCUAUCUGCGUAAGU_CC_ACA_UCGUUUGCCUUGUGGAAAAAUCCAGCGCCGCACAAAAAGCAGAUAAGGUAAUUAGCUUA_ ...........(((((...((((((((((((((((((............)))))..(((((............)))))......)))))).))))))))))))... (-22.04 = -22.80 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:10 2006